Basic Information:

  VIRBase ID:  

VHID00154431

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H3:  MIMAT0010202          CUL1:  NM_001370663     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H3	CUL1
miRBase Accession/Entrez ID	MIMAT0010202	8454
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CUL1	chr7:148492004(+) A-I      intronic chr7:148478225(+) A-I      intronic chr7:148439859(+) A-I      intronic chr7:148475148(+) A-I      intronic chr7:148475100(+) A-I      intronic chr7:148475096(+) A-I      intronic chr7:148475063(+) A-I      intronic chr7:148475061(+) A-I      intronic chr7:148475051(+) A-I      intronic chr7:148475044(+) A-I      intronic chr7:148475040(+) A-I      intronic chr7:148475035(+) A-I      intronic chr7:148475034(+) A-I      intronic chr7:148475024(+) A-I      intronic chr7:148474998(+) A-I      intronic chr7:148474996(+) A-I      intronic chr7:148474971(+) A-I      intronic chr7:148474948(+) A-I      intronic chr7:148473652(+) A-I      intronic chr7:148473643(+) A-I      intronic chr7:148462508(+) A-I      intronic chr7:148433036(+) A-I      intronic chr7:148407897(+) A-I      intronic chr7:148407812(+) A-I      intronic chr7:148407616(+) A-I      intronic chr7:148407554(+) A-I      intronic chr7:148407550(+) A-I      intronic chr7:148407546(+) A-I      intronic chr7:148428869(+) A-I      intronic chr7:148439910(+) A-I      intronic chr7:148440870(+) A-I      intronic chr7:148440864(+) A-I      intronic chr7:148440860(+) A-I      intronic chr7:148440858(+) A-I      intronic chr7:148463290(+) A-I      intronic chr7:148474981(+) A-I      intronic chr7:148474982(+) A-I      intronic chr7:148474997(+) A-I      intronic chr7:148475150(+) A-I      intronic chr7:148492612(+) A-I      intronic chr7:148492620(+) A-I      intronic chr7:148492626(+) A-I      intronic chr7:148463266(+) A-I      intronic chr7:148433083(+) A-I      intronic chr7:148433137(+) A-I      intronic chr7:148433145(+) A-I      intronic chr7:148433152(+) A-I      intronic chr7:148492751(+) A-I      intronic chr7:148492731(+) A-I      intronic chr7:148433526(+) A-I      intronic chr7:148433079(+) A-I      intronic chr7:148492715(+) A-I      intronic chr7:148492681(+) A-I      intronic chr7:148492680(+) A-I      intronic chr7:148433642(+) A-I      intronic chr7:148433675(+) A-I      intronic chr7:148433630(+) A-I      intronic chr7:148433679(+) A-I      intronic chr7:148434829(+) A-I      intronic chr7:148437244(+) A-I      intronic chr7:148437245(+) A-I      intronic chr7:148437321(+) A-I      intronic chr7:148448929(+) A-I      intronic chr7:148449131(+) A-I      intronic chr7:148449810(+) A-I      intronic chr7:148463274(+) A-I      intronic chr7:148449880(+) A-I      intronic chr7:148449882(+) A-I      intronic chr7:148449926(+) A-I      intronic chr7:148450018(+) A-I      intronic chr7:148458107(+) A-I      intronic chr7:148458111(+) A-I      intronic chr7:148440920(+) A-I      intronic chr7:148463284(+) A-I      intronic chr7:148433055(+) A-I      intronic chr7:148433151(+) A-I      intronic chr7:148431454(+) A-I      intronic chr7:148438600(+) A-I      intronic chr7:148439855(+) A-I      intronic chr7:148458112(+) A-I      intronic chr7:148458128(+) A-I      intronic chr7:148458194(+) A-I      intronic chr7:148492671(+) A-I      intronic chr7:148492063(+) A-I      intronic chr7:148492053(+) A-I      intronic chr7:148492050(+) A-I      intronic chr7:148492041(+) A-I      intronic chr7:148448004(+) A-I      intronic chr7:148492807(+) A-I      intronic chr7:148492486(+) A-I      intronic chr7:148433552(+) A-I      intronic chr7:148492187(+) A-I      intronic chr7:148463356(+) A-I      intronic chr7:148448030(+) A-I      intronic chr7:148458441(+) A-I      intronic chr7:148407820(+) A-I      intronic chr7:148448324(+) A-I      intronic chr7:148433223(+) A-I      intronic chr7:148407859(+) A-I      intronic chr7:148407155(+) A-I      intronic chr7:148463322(+) A-I      intronic chr7:148407060(+) A-I      intronic chr7:148458221(+) A-I      intronic chr7:148463316(+) A-I      intronic chr7:148433045(+) A-I      intronic chr7:148449017(+) A-I      intronic chr7:148492741(+) A-I      intronic chr7:148492498(+) A-I      intronic chr7:148437327(+) A-I      intronic chr7:148433518(+) A-I      intronic chr7:148451943(+) A-I      intronic chr7:148463273(+) A-I      intronic chr7:148462575(+) A-I      intronic chr7:148433447(+) A-I      intronic chr7:148434925(+) A-I      intronic chr7:148475075(+) A-I      intronic chr7:148433470(+) A-I      intronic chr7:148447956(+) A-I      intronic chr7:148458219(+) A-I      intronic chr7:148433155(+) A-I      intronic chr7:148438631(+) A-I      intronic chr7:148433460(+) A-I      intronic chr7:148492407(+) A-I      intronic chr7:148407077(+) A-I      intronic chr7:148449784(+) A-I      intronic chr7:148439794(+) A-I      intronic chr7:148440867(+) A-I      intronic chr7:148492747(+) A-I      intronic chr7:148433529(+) A-I      intronic chr7:148448952(+) A-I      intronic chr7:148407895(+) A-I      intronic chr7:148433512(+) A-I      intronic chr7:148474902(+) A-I      intronic chr7:148438630(+) A-I      intronic chr7:148463300(+) A-I      intronic chr7:148447964(+) A-I      intronic chr7:148474903(+) A-I      intronic chr7:148433207(+) A-I      intronic chr7:148475151(+) A-I      intronic chr7:148463438(+) A-I      intronic chr7:148449021(+) A-I      intronic chr7:148492506(+) A-I      intronic chr7:148440873(+) A-I      intronic chr7:148474972(+) A-I      intronic chr7:148439793(+) A-I      intronic chr7:148433181(+) A-I      intronic chr7:148449059(+) A-I      intronic chr7:148488261(+) A-I      intronic chr7:148449193(+) A-I      intronic chr7:148429535(+) A-I      intronic chr7:148474974(+) A-I      intronic chr7:148489127(+) A-I      intronic chr7:148492353(+) A-I      intronic chr7:148433132(+) A-I      intronic chr7:148440869(+) A-I      intronic chr7:148475087(+) A-I      intronic chr7:148475028(+) A-I      intronic chr7:148491988(+) A-I      intronic chr7:148462484(+) A-I      intronic chr7:148475008(+) A-I      intronic chr7:148492603(+) A-I      intronic chr7:148465577(+) A-I      intronic chr7:148492398(+) A-I      intronic chr7:148448951(+) A-I      intronic chr7:148448559(+) A-I      intronic chr7:148433671(+) A-I      intronic chr7:148407889(+) A-I      intronic chr7:148427965(+) A-I      intronic chr7:148407860(+) A-I      intronic chr7:148463457(+) A-I      intronic chr7:148465660(+) A-I      intronic chr7:148492421(+) A-I      intronic chr7:148463401(+) A-I      intronic chr7:148433452(+) A-I      intronic chr7:148433058(+) A-I      intronic chr7:148433465(+) A-I      intronic chr7:148492769(+) A-I      intronic chr7:148449764(+) A-I      intronic chr7:148449951(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CUL1	chr7:148463273(+) A-I intron -    15342557   //15258596 chr7:148463300(+) A-I intron -    15342557   //15258596 chr7:148463316(+) A-I intron -    15342557   //15258596 chr7:148463322(+) A-I intron -    15342557   //15258596 chr7:148463356(+) A-I intron -    15342557   //15258596 chr7:148463401(+) A-I intron -    15342557   //15258596 chr7:148463438(+) A-I intron -    15342557   //15258596 chr7:148463457(+) A-I intron -    15342557   //15258596 chr7:148400903(+) G-A intron -    22484847 chr7:148406933(+) A-G intron -    22484847 chr7:148407077(+) A-G intron -    22484847 chr7:148407155(+) A-G intron -    22484847 chr7:148407428(+) A-G intron -    22484847 chr7:148407820(+) A-G intron -    22484847 chr7:148407859(+) A-G intron -    22484847 chr7:148407889(+) A-G intron -    22484847 chr7:148407895(+) A-G intron -    22484847 chr7:148414171(+) A-T intron -    22484847 chr7:148414172(+) G-T intron -    22484847 chr7:148433132(+) A-G intron -    22484847 chr7:148433223(+) A-G intron -    22484847 chr7:148433447(+) A-G intron -    22484847 chr7:148433452(+) A-G intron -    22484847 chr7:148433460(+) A-G intron -    22484847 chr7:148433465(+) A-G intron -    22484847 chr7:148433470(+) A-G intron -    22484847 chr7:148433517(+) A-G intron -    22484847 chr7:148433518(+) A-G intron -    22484847 chr7:148433595(+) A-G intron -    22484847 chr7:148433633(+) A-G intron -    22484847 chr7:148438548(+) T-G intron -    22484847 chr7:148439709(+) G-T intron -    22484847 chr7:148439793(+) A-G intron -    22484847 chr7:148439794(+) A-G intron -    22484847 chr7:148440873(+) A-G intron -    22484847 chr7:148448943(+) A-G intron -    22484847 chr7:148448951(+) A-G intron -    22484847 chr7:148448952(+) A-G intron -    22484847 chr7:148449764(+) A-G intron -    22484847 chr7:148449784(+) A-G intron -    22484847 chr7:148458085(+) A-G intron -    22484847 chr7:148458193(+) A-G intron -    22484847 chr7:148458221(+) A-G intron -    22484847 chr7:148462484(+) A-G intron -    22484847 chr7:148463316(+) A-G intron -    22484847 chr7:148466965(+) G-A intron -    22484847 chr7:148478363(+) T-C intron -    22484847 chr7:148491988(+) A-G intron -    22484847 chr7:148492036(+) A-G intron -    22484847 chr7:148492353(+) A-G intron -    22484847 chr7:148492741(+) A-G intron -    22484847 chr7:148492747(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CUL1	chr7:148395113-148395114(+) m6A 5'UTR       24284625//24981863//27773535//22608085 chr7:148395184-148395185(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr7:148396031-148396032(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085 chr7:148396073-148396074(+) m6A 5'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr7:148427092-148427093(+) m6A 5'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr7:148427156-148427157(+) m6A 5'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr7:148427202-148427203(+) m6A 5'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr7:148427236-148427237(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr7:148427266-148427267(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr7:148451105-148451106(+) m6A CDS//intron       - chr7:148451155-148451156(+) m6A CDS//intron       24981863 chr7:148456442-148456443(+) m6A CDS       26404942 chr7:148456687-148456688(+) m6A CDS       26404942 chr7:148457562-148457563(+) m6A CDS       24981863//27773535 chr7:148463675-148463676(+) m6A CDS       24981863//27773535 chr7:148463738-148463739(+) m6A CDS       24981863//27773535 chr7:148463756-148463757(+) m6A CDS       24981863//27773535 chr7:148495700-148495701(+) m6A CDS       24981863//27773535 chr7:148495705-148495706(+) m6A CDS       24981863//27773535 chr7:148495717-148495718(+) m6A CDS       24981863//27773535 chr7:148495724-148495725(+) m6A CDS       24981863//27773535 chr7:148495737-148495738(+) m6A CDS       24981863//27773535//22608085 chr7:148495749-148495750(+) m6A CDS       24981863//27773535//22608085 chr7:148495756-148495757(+) m6A CDS       24981863//27773535//22608085 chr7:148496407-148496408(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr7:148496458-148496459(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:148497651-148497652(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497736-148497737(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497774-148497775(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497789-148497790(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497795-148497796(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497801-148497802(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497834-148497835(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497873-148497874(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497902-148497903(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148497911-148497912(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:148498036-148498037(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:148498060-148498061(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CUL1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H3
Interactor2: CUL1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg