Basic Information:

  VIRBase ID:  

VHID00151632

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          CCDC120:  NM_001163323     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	CCDC120
miRBase Accession/Entrez ID	MIMAT0015281	90060
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	JM11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC120	chrX:48927166(+) A-I      3'UTR chrX:48927171(+) A-I      3'UTR chrX:48927199(+) A-I      3'UTR chrX:48927279(+) A-I      3'UTR chrX:48927293(+) A-I      3'UTR chrX:48927208(+) A-I      3'UTR chrX:48927202(+) A-I      3'UTR chrX:48927209(+) A-I      3'UTR chrX:48923504(+) A-I      intronic chrX:48917858(+) A-I      intronic chrX:48927092(+) A-I      3'UTR chrX:48927158(+) A-I      3'UTR chrX:48927097(+) A-I      3'UTR chrX:48927221(+) A-I      3'UTR chrX:48917784(+) A-I      intronic chrX:48917700(+) A-I      intronic chrX:48917779(+) A-I      intronic chrX:48917828(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC120	chrX:48927097(+) A-I exon 3'UTR    15258596 chrX:48927148(+) A-I exon 3'UTR    15258596 chrX:48927158(+) A-I exon 3'UTR    15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC120	chrX:48911150-48911151(+) m6A 5'UTR       - chrX:48911267-48911268(+) m6A 5'UTR       - chrX:48925001-48925002(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863 chrX:48925079-48925080(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960 chrX:48925091-48925092(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960 chrX:48925103-48925104(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960 chrX:48925132-48925133(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960 chrX:48925173-48925174(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960 chrX:48925268-48925269(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960 chrX:48925346-48925347(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chrX:48925412-48925413(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chrX:48925436-48925437(+) m6A 3'UTR//CDS//exon       25456834//24981863//22575960//22608085 chrX:48925451-48925452(+) m6A 3'UTR//CDS//exon       25456834//24981863//22575960//22608085 chrX:48925458-48925459(+) m6A 3'UTR//CDS//exon       25456834//24981863//22575960//22608085 chrX:48926647-48926648(+) m6A 3'UTR//exon       25456834 chrX:48926659-48926660(+) m6A 3'UTR//exon       25456834 chrX:48926726-48926727(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC120	Cytosol K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: CCDC120

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg