Basic Information:

  VIRBase ID:  

VHID00151352

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          C1orf21:  NM_030806     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	C1orf21
miRBase Accession/Entrez ID	MIMAT0015281	81563
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PIG13

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C1orf21	chr1:184581698(+) A-I      intronic chr1:184581673(+) A-I      intronic chr1:184581699(+) A-I      intronic chr1:184581704(+) A-I      intronic chr1:184581713(+) A-I      intronic chr1:184581717(+) A-I      intronic chr1:184366563(+) A-I      intronic chr1:184472164(+) A-I      intronic chr1:184483189(+) A-I      intronic chr1:184575490(+) A-I      intronic chr1:184483199(+) A-I      intronic chr1:184432205(+) A-I      intronic chr1:184575500(+) A-I      intronic chr1:184583096(+) A-I      intronic chr1:184483173(+) A-I      intronic chr1:184575485(+) A-I      intronic chr1:184581613(+) A-I      intronic chr1:184581794(+) A-I      intronic chr1:184581596(+) A-I      intronic chr1:184366702(+) A-I      intronic chr1:184483181(+) A-I      intronic chr1:184368521(+) A-I      intronic chr1:184376028(+) A-I      intronic chr1:184582124(+) A-I      intronic chr1:184432181(+) A-I      intronic chr1:184490279(+) A-I      intronic chr1:184506966(+) A-I      intronic chr1:184515297(+) A-I      intronic chr1:184449041(+) A-I      intronic chr1:184379960(+) A-I      intronic chr1:184371574(+) A-I      intronic chr1:184570914(+) A-I      intronic chr1:184371621(+) A-I      intronic chr1:184587227(+) A-I      intronic chr1:184582128(+) A-I      intronic chr1:184556830(+) A-I      intronic chr1:184587075(+) A-I      intronic chr1:184381782(+) A-I      intronic chr1:184545317(+) A-I      intronic chr1:184383391(+) A-I      intronic chr1:184550328(+) A-I      intronic chr1:184570879(+) A-I      intronic chr1:184587229(+) A-I      intronic chr1:184490280(+) A-I      intronic chr1:184515307(+) A-I      intronic chr1:184528987(+) A-I      intronic chr1:184597178(+) A-I      3'UTR chr1:184460540(+) A-I      intronic chr1:184582155(+) A-I      intronic chr1:184583052(+) A-I      intronic chr1:184529019(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C1orf21	chr1:184391579(+) A-I intron -    21960545 chr1:184569333(+) A-I intron -    21960545 chr1:184569370(+) A-I intron -    21960545 chr1:184572858(+) A-I intron -    21960545 chr1:184576863(+) A-I intron -    21960545 chr1:184581596(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C1orf21	chr1:184356387-184356388(+) m6A 5'UTR       25456834 chr1:184356412-184356413(+) m1A 5'UTR       26863196//26863410 chr1:184356447-184356448(+) m6A 5'UTR       24209618//25456834 chr1:184446640-184446641(+) m6A 5'UTR       - chr1:184446710-184446711(+) m6A CDS       24981863 chr1:184476737-184476738(+) m6A CDS       24981863 chr1:184476802-184476803(+) m6A CDS       24981863 chr1:184476811-184476812(+) m6A CDS       24981863 chr1:184509134-184509135(+) m6A exon//intron       24981863 chr1:184588709-184588710(+) m6A 3'UTR//exon       22608085 chr1:184588782-184588783(+) m6A 3'UTR//exon       24981863//22608085 chr1:184588850-184588851(+) m6A 3'UTR//exon       24981863//22608085 chr1:184588874-184588875(+) m6A 3'UTR//exon       24981863//22608085 chr1:184588887-184588888(+) m6A 3'UTR//exon       24981863//22608085 chr1:184588898-184588899(+) m6A 3'UTR//exon       24981863//22608085 chr1:184588923-184588924(+) m6A 3'UTR//exon       24981863//22608085 chr1:184589050-184589051(+) m6A 3'UTR//exon       22608085 chr1:184589063-184589064(+) m6A 3'UTR//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C1orf21	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: C1orf21

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg