Detail Information

Basic Information:


  VIRBase ID:  

VHID00151102

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:           SLC25A23:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H6-5p SLC25A23
miRBase
Accession/Entrez ID		 MIMAT0015281 79085
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - APC2//MCSC2//SCaMC-3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC25A23
chr19:6455257(-) A-I      intronic
chr19:6453319(-) A-I      intronic
chr19:6453313(-) A-I      intronic
chr19:6449009(-) A-I      intronic
chr19:6452037(-) A-I      intronic
chr19:6445374(-) A-I      intronic
chr19:6450908(-) A-I      intronic
chr19:6453316(-) A-I      intronic
chr19:6455841(-) A-I      intronic
chr19:6447949(-) A-I      intronic
chr19:6446262(-) A-I      intronic
chr19:6445384(-) A-I      intronic
chr19:6445357(-) A-I      intronic
chr19:6444811(-) A-I      intronic
chr19:6445133(-) A-I      intronic
chr19:6443335(-) A-I      intronic
chr19:6445148(-) A-I      intronic
chr19:6448683(-) A-I      intronic
chr19:6447954(-) A-I      intronic
chr19:6445232(-) A-I      intronic
chr19:6456002(-) A-I      Syn:Lys->Lys
chr19:6456011(-) A-I      Syn:Ser->Ser
chr19:6453523(-) A-I      intronic
chr19:6455196(-) A-I      intronic
chr19:6447798(-) A-I      intronic
chr19:6445845(-) A-I      intronic
chr19:6443301(-) A-I      intronic
chr19:6444789(-) A-I      intronic
chr19:6451144(-) A-I      intronic
chr19:6455200(-) A-I      intronic
chr19:6446292(-) A-I      intronic
chr19:6450888(-) A-I      intronic
chr19:6455845(-) A-I      intronic
chr19:6451941(-) A-I      intronic
chr19:6450965(-) A-I      intronic
chr19:6451853(-) A-I      intronic
chr19:6447410(-) A-I      intronic
chr19:6447819(-) A-I      intronic
chr19:6450856(-) A-I      intronic
chr19:6445366(-) A-I      intronic
chr19:6451998(-) A-I      intronic
chr19:6445376(-) A-I      intronic
chr19:6444853(-) A-I      intronic
chr19:6453430(-) A-I      intronic
chr19:6445960(-) A-I      intronic
chr19:6450033(-) A-I      intronic
chr19:6455933(-) A-I      intronic
chr19:6455846(-) A-I      intronic
chr19:6455796(-) A-I      intronic
chr19:6455132(-) A-I      intronic
chr19:6453388(-) A-I      intronic
chr19:6446028(-) A-I      intronic
chr19:6455134(-) A-I      intronic
chr19:6451958(-) A-I      intronic
chr19:6438527(-) A-I      3'UTR
chr19:6457168(-) A-I      intronic
chr19:6447846(-) A-I      intronic
chr19:6452030(-) A-I      intronic
chr19:6451966(-) A-I      intronic
chr19:6453429(-) A-I      intronic
chr19:6445846(-) A-I      intronic
chr19:6445027(-) A-I      intronic
chr19:6451990(-) A-I      intronic
chr19:6446026(-) A-I      intronic
chr19:6452034(-) A-I      intronic
chr19:6453470(-) A-I      intronic
chr19:6455117(-) A-I      intronic
chr19:6448823(-) A-I      intronic
chr19:6455855(-) A-I      intronic
chr19:6448923(-) A-I      intronic
chr19:6447697(-) A-I      intronic
chr19:6452008(-) A-I      intronic
chr19:6457144(-) A-I      intronic
chr19:6450038(-) A-I      intronic
chr19:6446149(-) A-I      intronic
chr19:6445818(-) A-I      intronic
chr19:6445966(-) A-I      intronic
chr19:6448869(-) A-I      intronic
chr19:6438738(-) A-I      3'UTR
chr19:6446076(-) A-I      intronic
chr19:6443361(-) A-I      intronic
chr19:6451945(-) A-I      intronic
chr19:6444936(-) A-I      intronic
chr19:6451055(-) A-I      intronic
chr19:6450941(-) A-I      intronic
chr19:6445284(-) A-I      intronic
chr19:6455231(-) A-I      intronic
chr19:6450062(-) A-I      intronic
chr19:6445806(-) A-I      intronic
chr19:6446140(-) A-I      intronic
chr19:6445013(-) A-I      intronic
chr19:6448843(-) A-I      intronic
chr19:6449993(-) A-I      intronic
chr19:6448789(-) A-I      intronic
chr19:6451974(-) A-I      intronic
chr19:6455935(-) A-I      intronic
chr19:6450940(-) A-I      intronic
chr19:6446311(-) A-I      intronic
chr19:6447860(-) A-I      intronic
chr19:6448872(-) A-I      intronic
chr19:6438797(-) A-I      NonSyn:Thr->Ala
chr19:6456005(-) A-I      Syn:Leu->Leu
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC25A23
chr19:6441862(-) A-I exon 3'UTR    22327324
chr19:6455200(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC25A23
chr19:6436235-6436236(-) m6A 3'UTR       24284625//24981863
chr19:6436250-6436251(-) m6A 3'UTR       24284625//24981863
chr19:6436265-6436266(-) m6A 3'UTR       24284625//24981863
chr19:6436301-6436302(-) m6A 3'UTR       24284625//24981863
chr19:6436424-6436425(-) m6A 3'UTR//CDS       -
chr19:6436439-6436440(-) m6A 3'UTR//CDS//exon       -
chr19:6440102-6440103(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr19:6440181-6440182(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535
chr19:6440207-6440208(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr19:6440221-6440222(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr19:6440234-6440235(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr19:6440359-6440360(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:6440369-6440370(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:6440375-6440376(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr19:6440400-6440401(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828
chr19:6440415-6440416(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828
chr19:6440499-6440500(-) m6A 3'UTR//intron       24981863
chr19:6440516-6440517(-) m6A 3'UTR//intron       24981863
chr19:6440650-6440651(-) m6A 3'UTR//intron       24284625//27773535//27371828
chr19:6440663-6440664(-) m6A 3'UTR//intron       24284625//27773535//27371828
chr19:6440974-6440975(-) m6A 3'UTR//intron       24284625//27773535
chr19:6441081-6441082(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960
chr19:6441334-6441335(-) m6A 3'UTR//intron       24284625//24209618//27773535//22575960
chr19:6441463-6441464(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:6441560-6441561(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr19:6441801-6441802(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:6441859-6441860(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:6441929-6441930(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:6441981-6441982(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr19:6442019-6442020(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535
chr19:6452434-6452435(-) m6A CDS//exon//intron       24284625
chr19:6454470-6454471(-) m6A CDS       27773536
chr19:6454591-6454592(-) m6A CDS       27773536
chr19:6454610-6454611(-) m6A CDS       27773536
chr19:6454660-6454661(-) Y CDS       26075521
chr19:6456450-6456451(-) Y CDS//exon       26075521
chr19:6459499-6459500(-) m6A CDS//exon//intron       24284625//27773536
chr19:6459574-6459575(-) m6A CDS//exon//intron       24284625//24209618//27371828//27773536//22575960
chr19:6459768-6459769(-) m6A exon//intron       24209618//25456834//24981863//27371828//27773536
chr19:6460850-6460851(-) m6A 5'UTR       -
chr19:6465096-6465097(-) m6A 5'UTR       -
chr19:6465115-6465116(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC25A23
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H6-5p
Interactor2: SLC25A23

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...