Basic Information:

  VIRBase ID:  

VHID00151054

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          MARCKSL1:  NM_023009     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	MARCKSL1
miRBase Accession/Entrez ID	MIMAT0015281	65108
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	F52//MACMARCKS//MLP//MLP1//MRP

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MARCKSL1	chr1:32800127-32800128(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr1:32800158-32800159(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr1:32800285-32800286(-) m1A CDS       26863410 chr1:32800326-32800327(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:32800465-32800466(-) Gm CDS       - chr1:32800532-32800533(-) m6A CDS       24284625//24209618//27773535//27371828//27773536 chr1:32800625-32800626(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//27773536 chr1:32800669-32800670(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//27773536 chr1:32801642-32801643(-) m6A 5'UTR       24284625//24209618//28052920//27773535//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MARCKSL1	Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: MARCKSL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg