Basic Information:

  VIRBase ID:  

VHID00150653

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          MTFR1L:  NM_019557     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	MTFR1L
miRBase Accession/Entrez ID	MIMAT0015281	56181
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM54B//HYST1888//MST116//MSTP116

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MTFR1L	chr1:26154418(+) A-I      intronic chr1:26154454(+) A-I      intronic chr1:26154455(+) A-I      intronic chr1:26154479(+) A-I      intronic chr1:26154835(+) A-I      intronic chr1:26154841(+) A-I      intronic chr1:26154916(+) A-I      intronic chr1:26154996(+) A-I      intronic chr1:26154212(+) A-I      intronic chr1:26154369(+) A-I      intronic chr1:26155057(+) A-I      intronic chr1:26154450(+) A-I      intronic chr1:26154200(+) A-I      intronic chr1:26154818(+) A-I      intronic chr1:26155011(+) A-I      intronic chr1:26154296(+) A-I      intronic chr1:26154993(+) A-I      intronic chr1:26154278(+) A-I      intronic chr1:26154383(+) A-I      intronic chr1:26154392(+) A-I      intronic chr1:26154825(+) A-I      intronic chr1:26154297(+) A-I      intronic chr1:26154819(+) A-I      intronic chr1:26154859(+) A-I      intronic chr1:26155724(+) A-I      intronic chr1:26154436(+) A-I      intronic chr1:26154927(+) A-I      intronic chr1:26154451(+) A-I      intronic chr1:26155008(+) A-I      intronic chr1:26154484(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MTFR1L	chr1:26146680-26146681(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr1:26146724-26146725(+) m6A 5'UTR//intron       24284625//25456834//24981863 chr1:26146740-26146741(+) m6A 5'UTR//intron       24284625 chr1:26146805-26146806(+) m6A 5'UTR//intron       - chr1:26147042-26147043(+) m6A 5'UTR//intron       24284625 chr1:26147111-26147112(+) m6A 5'UTR//intron       24284625 chr1:26147294-26147295(+) m6A 5'UTR//intron       24284625 chr1:26147343-26147344(+) m6A 5'UTR//intron       - chr1:26147353-26147354(+) m6A 5'UTR//intron       24284625 chr1:26147386-26147387(+) m6A 5'UTR//intron       24284625 chr1:26156124-26156125(+) m6A 3'UTR//CDS//exon//intron       27773535//22608085 chr1:26156192-26156193(+) m6A CDS//exon       22608085 chr1:26156198-26156199(+) m6A CDS//exon       22608085 chr1:26156269-26156270(+) m6A CDS//exon       22608085 chr1:26156290-26156291(+) m6A 3'UTR//CDS//exon       22608085 chr1:26156306-26156307(+) m6A 3'UTR//CDS//exon       - chr1:26158413-26158414(+) m6A 3'UTR//CDS//exon       - chr1:26158437-26158438(+) m6A 3'UTR//CDS//exon       24284625 chr1:26158535-26158536(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:26158648-26158649(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr1:26158683-26158684(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr1:26158690-26158691(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr1:26158727-26158728(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr1:26158853-26158854(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr1:26158875-26158876(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr1:26159003-26159004(+) m6A 3'UTR//exon       24284625 chr1:26159197-26159198(+) m6A 3'UTR//exon       - chr1:26159213-26159214(+) m6A 3'UTR//exon       - chr1:26159259-26159260(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MTFR1L	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: MTFR1L

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg