Basic Information:

  VIRBase ID:  

VHID00148687

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          TUFT1:  NM_001301317     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	TUFT1
miRBase Accession/Entrez ID	MIMAT0015281	7286
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TUFT1	chr1:151529134(+) A-I      intronic chr1:151529150(+) A-I      intronic chr1:151514766(+) A-I      intronic chr1:151550387(+) A-I      intronic chr1:151550381(+) A-I      intronic chr1:151550312(+) A-I      intronic chr1:151550237(+) A-I      intronic chr1:151549472(+) A-I      intronic chr1:151549324(+) A-I      intronic chr1:151529371(+) A-I      intronic chr1:151529125(+) A-I      intronic chr1:151526993(+) A-I      intronic chr1:151522297(+) A-I      intronic chr1:151517666(+) A-I      intronic chr1:151516695(+) A-I      intronic chr1:151516691(+) A-I      intronic chr1:151516654(+) A-I      intronic chr1:151516482(+) A-I      intronic chr1:151514758(+) A-I      intronic chr1:151516731(+) A-I      intronic chr1:151527427(+) A-I      intronic chr1:151527440(+) A-I      intronic chr1:151527441(+) A-I      intronic chr1:151527442(+) A-I      intronic chr1:151527472(+) A-I      intronic chr1:151527584(+) A-I      intronic chr1:151527643(+) A-I      intronic chr1:151527651(+) A-I      intronic chr1:151516692(+) A-I      intronic chr1:151529121(+) A-I      intronic chr1:151529122(+) A-I      intronic chr1:151528985(+) A-I      intronic chr1:151542920(+) A-I      intronic chr1:151546154(+) A-I      intronic chr1:151550321(+) A-I      intronic chr1:151542967(+) A-I      intronic chr1:151527597(+) A-I      intronic chr1:151529464(+) A-I      intronic chr1:151550355(+) A-I      intronic chr1:151525209(+) A-I      intronic chr1:151527628(+) A-I      intronic chr1:151525092(+) A-I      intronic chr1:151528979(+) A-I      intronic chr1:151525060(+) A-I      intronic chr1:151543312(+) A-I      intronic chr1:151543322(+) A-I      intronic chr1:151527620(+) A-I      intronic chr1:151522324(+) A-I      intronic chr1:151522261(+) A-I      intronic chr1:151520872(+) A-I      intronic chr1:151520865(+) A-I      intronic chr1:151544602(+) A-I      intronic chr1:151544659(+) A-I      intronic chr1:151546145(+) A-I      intronic chr1:151546153(+) A-I      intronic chr1:151533673(+) A-I      intronic chr1:151552969(+) A-I      intronic chr1:151527698(+) A-I      intronic chr1:151550391(+) A-I      intronic chr1:151531390(+) A-I      intronic chr1:151527690(+) A-I      intronic chr1:151532812(+) A-I      intronic chr1:151531400(+) A-I      intronic chr1:151550371(+) A-I      intronic chr1:151532370(+) A-I      intronic chr1:151527684(+) A-I      intronic chr1:151527678(+) A-I      intronic chr1:151522219(+) A-I      intronic chr1:151533513(+) A-I      intronic chr1:151533587(+) A-I      intronic chr1:151528964(+) A-I      intronic chr1:151533609(+) A-I      intronic chr1:151533681(+) A-I      intronic chr1:151542910(+) A-I      intronic chr1:151542919(+) A-I      intronic chr1:151550404(+) A-I      intronic chr1:151528971(+) A-I      intronic chr1:151533869(+) A-I      intronic chr1:151529024(+) A-I      intronic chr1:151550359(+) A-I      intronic chr1:151528962(+) A-I      intronic chr1:151532339(+) A-I      intronic chr1:151523323(+) A-I      intronic chr1:151555678(+) A-I      3'UTR chr1:151549233(+) A-I      intronic chr1:151516619(+) A-I      intronic chr1:151532857(+) A-I      intronic chr1:151522601(+) A-I      intronic chr1:151532409(+) A-I      intronic chr1:151543221(+) A-I      intronic chr1:151523296(+) A-I      intronic chr1:151516671(+) A-I      intronic chr1:151544513(+) A-I      intronic chr1:151528000(+) A-I      intronic chr1:151533815(+) A-I      intronic chr1:151529356(+) A-I      intronic chr1:151527238(+) A-I      intronic chr1:151550422(+) A-I      intronic chr1:151529149(+) A-I      intronic chr1:151533816(+) A-I      intronic chr1:151550811(+) A-I      intronic chr1:151527685(+) A-I      intronic chr1:151516837(+) A-I      intronic chr1:151532534(+) A-I      intronic chr1:151525748(+) A-I      intronic chr1:151529107(+) A-I      intronic chr1:151533813(+) A-I      intronic chr1:151533599(+) A-I      intronic chr1:151544566(+) A-I      intronic chr1:151550925(+) A-I      intronic chr1:151527755(+) A-I      intronic chr1:151550408(+) A-I      intronic chr1:151550682(+) A-I      intronic chr1:151550810(+) A-I      intronic chr1:151529362(+) A-I      intronic chr1:151542802(+) A-I      intronic chr1:151544518(+) A-I      intronic chr1:151550270(+) A-I      intronic chr1:151542822(+) A-I      intronic chr1:151550290(+) A-I      intronic chr1:151533909(+) A-I      intronic chr1:151549239(+) A-I      intronic chr1:151514943(+) A-I      intronic chr1:151544472(+) A-I      intronic chr1:151542887(+) A-I      intronic chr1:151532552(+) A-I      intronic chr1:151517572(+) A-I      intronic chr1:151550915(+) A-I      intronic chr1:151545979(+) A-I      intronic chr1:151529096(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TUFT1	chr1:151516559(+) A-I intron -    21960545 chr1:151516619(+) A-I intron -    21960545 chr1:151516671(+) A-I intron -    21960545 chr1:151517692(+) A-I intron -    21960545 chr1:151522261(+) A-I intron -    21960545 chr1:151522297(+) A-I intron -    21960545 chr1:151522324(+) A-I intron -    21960545 chr1:151523257(+) A-I intron -    21960545 chr1:151523283(+) A-I intron -    21960545 chr1:151523300(+) A-I intron -    21960545 chr1:151523323(+) A-I intron -    21960545 chr1:151526980(+) A-I intron -    21960545 chr1:151528130(+) A-I intron -    21960545 chr1:151528979(+) A-I intron -    21960545 chr1:151528984(+) A-I intron -    21960545 chr1:151528985(+) A-I intron -    21960545 chr1:151528989(+) A-I intron -    21960545 chr1:151529024(+) A-I intron -    21960545 chr1:151529096(+) A-I intron -    21960545 chr1:151529107(+) A-I intron -    21960545 chr1:151529217(+) A-I intron -    21960545 chr1:151533428(+) A-I intron -    21960545 chr1:151542887(+) A-I intron -    21960545 chr1:151542894(+) A-I intron -    21960545 chr1:151543221(+) A-I intron -    21960545 chr1:151543411(+) A-I intron -    21960545 chr1:151543418(+) A-I intron -    21960545 chr1:151543435(+) A-I intron -    21960545 chr1:151544450(+) A-I intron -    21960545 chr1:151544472(+) A-I intron -    21960545 chr1:151544527(+) A-I intron -    21960545 chr1:151544602(+) A-I intron -    21960545 chr1:151549239(+) A-I intron -    21960545 chr1:151550312(+) A-I intron -    21960545 chr1:151550355(+) A-I intron -    21960545 chr1:151550359(+) A-I intron -    21960545 chr1:151550381(+) A-I intron -    21960545 chr1:151550451(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TUFT1	chr1:151512796-151512797(+) m6A 5'UTR       24209618//25456834//24981863 chr1:151512808-151512809(+) m6A 5'UTR       24209618//25456834//24981863 chr1:151512858-151512859(+) m6A CDS//exon       24284625//24209618//25456834//24981863 chr1:151512891-151512892(+) m6A CDS//exon       24284625//24209618//25456834//24981863 chr1:151534290-151534291(+) m6A intron       24209618 chr1:151534576-151534577(+) m6A CDS//exon//intron       24209618 chr1:151534604-151534605(+) m6A CDS//exon//intron       24209618 chr1:151534619-151534620(+) m6A CDS//exon//intron       24209618 chr1:151534625-151534626(+) m6A CDS//exon//intron       24209618 chr1:151535072-151535073(+) m6A CDS//exon       24209618 chr1:151535122-151535123(+) m6A CDS//exon       24209618 chr1:151535143-151535144(+) m6A CDS//exon       24209618 chr1:151536404-151536405(+) m6A CDS//exon       24209618 chr1:151537007-151537008(+) m6A CDS//exon//intron       24209618 chr1:151537055-151537056(+) m6A CDS//exon//intron       24209618 chr1:151542184-151542185(+) m6A CDS//exon       24209618 chr1:151542229-151542230(+) m6A CDS//exon       24209618 chr1:151542295-151542296(+) m6A exon//intron       24209618//24981863 chr1:151546777-151546778(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr1:151546809-151546810(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr1:151547439-151547440(+) m6A CDS//intron       24284625//24209618//24981863//22575960 chr1:151553501-151553502(+) m6A CDS//intron       24284625//24209618 chr1:151553508-151553509(+) m6A CDS//intron       24284625//24209618 chr1:151554177-151554178(+) m6A CDS//intron       24284625//24209618//24981863//22575960 chr1:151554299-151554300(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr1:151554400-151554401(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr1:151554487-151554488(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr1:151554492-151554493(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr1:151554570-151554571(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr1:151554627-151554628(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:151554651-151554652(+) m6A 3'UTR       24284625//24209618//24981863 chr1:151554708-151554709(+) m6A 3'UTR       24284625//24209618//24981863 chr1:151554752-151554753(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TUFT1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: TUFT1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg