Basic Information:

  VIRBase ID:  

VHID00148491

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          SIAH1:  NM_003031     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	SIAH1
miRBase Accession/Entrez ID	MIMAT0015281	6477
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SIAH1A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SIAH1	chr16:48395694(-) A-I      NonSyn:Lys->Glu chr16:48395693(-) A-I      NonSyn:Lys->Arg chr16:48395682(-) A-I      NonSyn:Asn->Asp chr16:48395683(-) A-I      Syn:Glu->Glu chr16:48395718(-) A-I      NonSyn:Ile->Val chr16:48395672(-) A-I      NonSyn:Tyr->Cys chr16:48395658(-) A-I      NonSyn:Asn->Asp chr16:48395657(-) A-I      NonSyn:Asn->Ser chr16:48395729(-) A-I      NonSyn:Gln->Arg chr16:48395704(-) A-I      NonSyn:Ile->Met chr16:48411399(-) A-I      intronic chr16:48411378(-) A-I      intronic chr16:48398025(-) A-I      intronic chr16:48398017(-) A-I      intronic chr16:48398030(-) A-I      intronic chr16:48398038(-) A-I      intronic chr16:48411767(-) A-I      intronic chr16:48411786(-) A-I      intronic chr16:48412012(-) A-I      intronic chr16:48412129(-) A-I      intronic chr16:48412019(-) A-I      intronic chr16:48412182(-) A-I      intronic chr16:48415193(-) A-I      intronic chr16:48416070(-) A-I      intronic chr16:48416085(-) A-I      intronic chr16:48412259(-) A-I      intronic chr16:48412052(-) A-I      intronic chr16:48412058(-) A-I      intronic chr16:48411406(-) A-I      intronic chr16:48411437(-) A-I      intronic chr16:48412257(-) A-I      intronic chr16:48400946(-) A-I      intronic chr16:48401062(-) A-I      intronic chr16:48411479(-) A-I      intronic chr16:48412181(-) A-I      intronic chr16:48412251(-) A-I      intronic chr16:48412152(-) A-I      intronic chr16:48403531(-) A-I      intronic chr16:48411588(-) A-I      intronic chr16:48403541(-) A-I      intronic chr16:48412116(-) A-I      intronic chr16:48411579(-) A-I      intronic chr16:48411732(-) A-I      intronic chr16:48403577(-) A-I      intronic chr16:48412220(-) A-I      intronic chr16:48416216(-) A-I      intronic chr16:48411428(-) A-I      intronic chr16:48409462(-) A-I      intronic chr16:48412046(-) A-I      intronic chr16:48411580(-) A-I      intronic chr16:48411525(-) A-I      intronic chr16:48403641(-) A-I      intronic chr16:48411533(-) A-I      intronic chr16:48414354(-) A-I      intronic chr16:48400980(-) A-I      intronic chr16:48402433(-) A-I      intronic chr16:48400905(-) A-I      intronic chr16:48400963(-) A-I      intronic chr16:48411438(-) A-I      intronic chr16:48412225(-) A-I      intronic chr16:48400981(-) A-I      intronic chr16:48411524(-) A-I      intronic chr16:48403465(-) A-I      intronic chr16:48411601(-) A-I      intronic chr16:48403571(-) A-I      intronic chr16:48411482(-) A-I      intronic chr16:48403553(-) A-I      intronic chr16:48416214(-) A-I      intronic chr16:48411467(-) A-I      intronic chr16:48414184(-) A-I      intronic chr16:48414301(-) A-I      intronic chr16:48412218(-) A-I      intronic chr16:48411562(-) A-I      intronic chr16:48410557(-) A-I      intronic chr16:48411398(-) A-I      intronic chr16:48415011(-) A-I      intronic chr16:48398043(-) A-I      intronic chr16:48402434(-) A-I      intronic chr16:48411403(-) A-I      intronic chr16:48412124(-) A-I      intronic chr16:48403446(-) A-I      intronic chr16:48401038(-) A-I      intronic chr16:48398632(-) A-I      intronic chr16:48411468(-) A-I      intronic chr16:48411367(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SIAH1	chr16:48411437(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIAH1	chr16:48395290-48395291(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr16:48395339-48395340(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr16:48395382-48395383(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//27371828//22608085 chr16:48395406-48395407(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr16:48395454-48395455(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr16:48395477-48395478(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:48395699-48395700(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr16:48395754-48395755(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:48395833-48395834(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:48395992-48395993(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr16:48396326-48396327(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:48396407-48396408(-) m6A 5'UTR//intron       24284625//24209618//27371828//22608085 chr16:48396422-48396423(-) m6A 5'UTR//intron       22608085 chr16:48396433-48396434(-) m6A 5'UTR//intron       22608085 chr16:48396562-48396563(-) m6A 5'UTR//intron       22608085 chr16:48396678-48396679(-) m6A 5'UTR//intron       22608085 chr16:48396816-48396817(-) m6A 5'UTR//intron       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIAH1	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: SIAH1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg