Basic Information:

  VIRBase ID:  

VHID00147928

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-5p:  MIMAT0015281          LAMC2:  NM_005562     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-5p	LAMC2
miRBase Accession/Entrez ID	MIMAT0015281	3918
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B2T//BM600//CSF//EBR2//EBR2A//LAMB2T//LAMNB2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LAMC2	chr1:183168933(+) A-I      intronic chr1:183166627(+) A-I      intronic chr1:183165492(+) A-I      intronic chr1:183162046(+) A-I      intronic chr1:183160838(+) A-I      intronic chr1:183174038(+) A-I      intronic chr1:183161943(+) A-I      intronic chr1:183161933(+) A-I      intronic chr1:183169475(+) A-I      intronic chr1:183161877(+) A-I      intronic chr1:183160949(+) A-I      intronic chr1:183161944(+) A-I      intronic chr1:183169344(+) A-I      intronic chr1:183168368(+) A-I      intronic chr1:183169316(+) A-I      intronic chr1:183165434(+) A-I      intronic chr1:183169325(+) A-I      intronic chr1:183165438(+) A-I      intronic chr1:183174155(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LAMC2	chr1:183155419-183155420(+) m6A 5'UTR       25456834//24981863 chr1:183155460-183155461(+) m6A 5'UTR       25456834//24981863 chr1:183155466-183155467(+) m6A 5'UTR       25456834//24981863 chr1:183206586-183206587(+) m6A CDS       24981863 chr1:183207547-183207548(+) m6A CDS       24981863 chr1:183208516-183208517(+) m6A CDS       24981863 chr1:183208553-183208554(+) m6A CDS       24209618//24981863 chr1:183208596-183208597(+) m6A CDS       24209618//24981863 chr1:183208694-183208695(+) m6A CDS//exon       24209618//24981863 chr1:183208740-183208741(+) m6A exon//intron       24209618//24981863 chr1:183208768-183208769(+) m6A exon//intron       24209618//24981863 chr1:183209190-183209191(+) m6A CDS//exon       24209618//24981863 chr1:183209239-183209240(+) m6A CDS//exon       24209618//24981863 chr1:183209487-183209488(+) m6A CDS//exon       24209618//24981863 chr1:183209534-183209535(+) m6A 3'UTR//intron       24209618 chr1:183209584-183209585(+) m6A 3'UTR//intron       24209618 chr1:183209701-183209702(+) m6A 3'UTR//intron       24209618 chr1:183209735-183209736(+) m6A 3'UTR//intron       24209618//25456834 chr1:183209776-183209777(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183209803-183209804(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183209810-183209811(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183209845-183209846(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183209863-183209864(+) m6A 3'UTR//intron       24209618//25456834 chr1:183209972-183209973(+) m6A 3'UTR//intron       24209618 chr1:183210145-183210146(+) m6A 3'UTR//intron       24209618//24981863 chr1:183212346-183212347(+) m6A CDS       24209618//24981863 chr1:183212433-183212434(+) m6A CDS       24209618//25456834//24981863 chr1:183212467-183212468(+) m6A CDS       24209618//25456834//24981863 chr1:183212476-183212477(+) m6A CDS       24209618//25456834//24981863 chr1:183212485-183212486(+) m6A CDS       24209618//25456834//24981863 chr1:183212622-183212623(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183212630-183212631(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr1:183212780-183212781(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr1:183212794-183212795(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr1:183212807-183212808(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr1:183212811-183212812(+) m6A 3'UTR//exon       24981863//22608085 chr1:183212867-183212868(+) m6A 3'UTR//intron       24209618//25456834//24981863//22608085 chr1:183212925-183212926(+) m6A 3'UTR//intron       24209618//25456834//24981863//22608085 chr1:183212967-183212968(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr1:183213077-183213078(+) m6A 3'UTR       24209618 chr1:183213127-183213128(+) m6A 3'UTR       24209618 chr1:183213393-183213394(+) m6A 3'UTR       24981863 chr1:183213609-183213610(+) m6A 3'UTR       24981863 chr1:183213889-183213890(+) m6A 3'UTR       24981863 chr1:183213930-183213931(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LAMC2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-5p
Interactor2: LAMC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg