Basic Information:

  VIRBase ID:  

VHID00146276

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          LDLRAD3:  NM_174902     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	LDLRAD3
miRBase Accession/Entrez ID	MIMAT0015280	143458
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LRAD3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LDLRAD3	chr11:36119232(+) A-I      intronic chr11:36119233(+) A-I      intronic chr11:35979213(+) A-I      intronic chr11:35979227(+) A-I      intronic chr11:36172225(+) A-I      intronic chr11:36119234(+) A-I      intronic chr11:36119239(+) A-I      intronic chr11:36119254(+) A-I      intronic chr11:36119262(+) A-I      intronic chr11:36119263(+) A-I      intronic chr11:36119266(+) A-I      intronic chr11:36119268(+) A-I      intronic chr11:36172230(+) A-I      intronic chr11:36119269(+) A-I      intronic chr11:35979189(+) A-I      intronic chr11:36172237(+) A-I      intronic chr11:36172254(+) A-I      intronic chr11:36172255(+) A-I      intronic chr11:35979185(+) A-I      intronic chr11:36119273(+) A-I      intronic chr11:36128880(+) A-I      intronic chr11:36243689(+) A-I      intronic chr11:36119231(+) A-I      intronic chr11:36158341(+) A-I      intronic chr11:36157222(+) A-I      intronic chr11:35979191(+) A-I      intronic chr11:35979192(+) A-I      intronic chr11:35979194(+) A-I      intronic chr11:35979200(+) A-I      intronic chr11:35979211(+) A-I      intronic chr11:35979166(+) A-I      intronic chr11:36158424(+) A-I      intronic chr11:36223664(+) A-I      intronic chr11:36228335(+) A-I      intronic chr11:36107279(+) A-I      intronic chr11:36180916(+) A-I      intronic chr11:36103829(+) A-I      intronic chr11:35982247(+) A-I      intronic chr11:36181220(+) A-I      intronic chr11:35979291(+) A-I      intronic chr11:35979276(+) A-I      intronic chr11:35979197(+) A-I      intronic chr11:36105554(+) A-I      intronic chr11:36243748(+) A-I      intronic chr11:36085995(+) A-I      intronic chr11:35979092(+) A-I      intronic chr11:36219368(+) A-I      intronic chr11:36011994(+) A-I      intronic chr11:36172120(+) A-I      intronic chr11:36181071(+) A-I      intronic chr11:36015808(+) A-I      intronic chr11:36144488(+) A-I      intronic chr11:36245080(+) A-I      intronic chr11:36245023(+) A-I      intronic chr11:36245015(+) A-I      intronic chr11:36245011(+) A-I      intronic chr11:36243149(+) A-I      intronic chr11:36242624(+) A-I      intronic chr11:36229089(+) A-I      intronic chr11:36229085(+) A-I      intronic chr11:36221665(+) A-I      intronic chr11:36219343(+) A-I      intronic chr11:36219349(+) A-I      intronic chr11:36219320(+) A-I      intronic chr11:36182619(+) A-I      intronic chr11:36182579(+) A-I      intronic chr11:36180934(+) A-I      intronic chr11:36172217(+) A-I      intronic chr11:36172194(+) A-I      intronic chr11:36172116(+) A-I      intronic chr11:36172115(+) A-I      intronic chr11:36212973(+) A-I      intronic chr11:36168875(+) A-I      intronic chr11:36129835(+) A-I      intronic chr11:36129830(+) A-I      intronic chr11:36129820(+) A-I      intronic chr11:36129795(+) A-I      intronic chr11:36129683(+) A-I      intronic chr11:36105598(+) A-I      intronic chr11:36105493(+) A-I      intronic chr11:35995156(+) A-I      intronic chr11:35982248(+) A-I      intronic chr11:36172190(+) A-I      intronic chr11:36245078(+) A-I      intronic chr11:35979203(+) A-I      intronic chr11:36138600(+) A-I      intronic chr11:36015789(+) A-I      intronic chr11:36181243(+) A-I      intronic chr11:36077804(+) A-I      intronic chr11:36116629(+) A-I      intronic chr11:36168479(+) A-I      intronic chr11:36168569(+) A-I      intronic chr11:36158321(+) A-I      intronic chr11:36219529(+) A-I      intronic chr11:36219364(+) A-I      intronic chr11:35979271(+) A-I      intronic chr11:36211952(+) A-I      intronic chr11:36219360(+) A-I      intronic chr11:36243142(+) A-I      intronic chr11:36171931(+) A-I      intronic chr11:36171957(+) A-I      intronic chr11:36082953(+) A-I      intronic chr11:35978350(+) A-I      intronic chr11:36135191(+) A-I      intronic chr11:36081671(+) A-I      intronic chr11:35978366(+) A-I      intronic chr11:36107256(+) A-I      intronic chr11:36229144(+) A-I      intronic chr11:36228964(+) A-I      intronic chr11:36161809(+) A-I      intronic chr11:35981217(+) A-I      intronic chr11:36181267(+) A-I      intronic chr11:36105508(+) A-I      intronic chr11:35979267(+) A-I      intronic chr11:36245132(+) A-I      intronic chr11:36144298(+) A-I      intronic chr11:36219526(+) A-I      intronic chr11:35981371(+) A-I      intronic chr11:35981345(+) A-I      intronic chr11:35995221(+) A-I      intronic chr11:36111249(+) A-I      intronic chr11:36103817(+) A-I      intronic chr11:36015807(+) A-I      intronic chr11:36180835(+) A-I      intronic chr11:36180915(+) A-I      intronic chr11:36243855(+) A-I      intronic chr11:36111283(+) A-I      intronic chr11:35995207(+) A-I      intronic chr11:36211943(+) A-I      intronic chr11:35979188(+) A-I      intronic chr11:35994483(+) A-I      intronic chr11:36116553(+) A-I      intronic chr11:36144616(+) A-I      intronic chr11:36228998(+) A-I      intronic chr11:36245136(+) A-I      intronic chr11:36245180(+) A-I      intronic chr11:36228406(+) A-I      intronic chr11:36129679(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LDLRAD3	chr11:36248973-36248974(+) m6A CDS//exon//intron       24284625 chr11:36250765-36250766(+) m6A CDS//exon       24284625//24981863//22575960 chr11:36250855-36250856(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:36250912-36250913(+) m6A CDS       24284625//25456834//24981863//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LDLRAD3	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: LDLRAD3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg