Basic Information:

  VIRBase ID:  

VHID00146059

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          RASGRP4:  NM_001146204     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	RASGRP4
miRBase Accession/Entrez ID	MIMAT0015280	115727
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RASGRP4	chr19:38900123(-) A-I      3'UTR chr19:38900136(-) A-I      3'UTR chr19:38900125(-) A-I      3'UTR chr19:38900135(-) A-I      3'UTR chr19:38900145(-) A-I      3'UTR chr19:38900161(-) A-I      3'UTR chr19:38900185(-) A-I      3'UTR chr19:38900186(-) A-I      3'UTR chr19:38902854(-) A-I      intronic chr19:38914924(-) A-I      intronic chr19:38902826(-) A-I      intronic chr19:38902252(-) A-I      intronic chr19:38914933(-) A-I      intronic chr19:38902863(-) A-I      intronic chr19:38914928(-) A-I      intronic chr19:38914927(-) A-I      intronic chr19:38915032(-) A-I      intronic chr19:38910185(-) A-I      intronic chr19:38902258(-) A-I      intronic chr19:38915354(-) A-I      intronic chr19:38915117(-) A-I      intronic chr19:38915138(-) A-I      intronic chr19:38907021(-) A-I      intronic chr19:38914017(-) A-I      intronic chr19:38914009(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RASGRP4	chr19:38899769-38899770(-) m6A 3'UTR//exon       - chr19:38899790-38899791(-) m6A 3'UTR//exon       - chr19:38899838-38899839(-) m6A 3'UTR//exon       - chr19:38910782-38910783(-) m6A CDS//exon       - chr19:38910790-38910791(-) m6A CDS//exon       - chr19:38912676-38912677(-) m6A CDS//exon       - chr19:38912722-38912723(-) m6A CDS//exon       - chr19:38916717-38916718(-) m6A CDS//exon       - chr19:38916726-38916727(-) m6A CDS//exon       - chr19:38916761-38916762(-) m6A 5'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RASGRP4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: RASGRP4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg