Basic Information:

  VIRBase ID:  

VHID00146007

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          SCAMP4:  NM_001329539     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	SCAMP4
miRBase Accession/Entrez ID	MIMAT0015280	113178
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SCAMP-4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SCAMP4	chr19:1916623(+) A-I      intronic chr19:1925214(+) A-I      3'UTR chr19:1925249(+) A-I      3'UTR chr19:1917211(+) A-I      intronic chr19:1915793(+) A-I      intronic chr19:1915798(+) A-I      intronic chr19:1915830(+) A-I      intronic chr19:1915865(+) A-I      intronic chr19:1915997(+) A-I      intronic chr19:1916594(+) A-I      intronic chr19:1917190(+) A-I      intronic chr19:1917207(+) A-I      intronic chr19:1918681(+) A-I      intronic chr19:1921699(+) A-I      intronic chr19:1915782(+) A-I      intronic chr19:1915729(+) A-I      intronic chr19:1925269(+) A-I      3'UTR chr19:1925252(+) A-I      3'UTR chr19:1925332(+) A-I      3'UTR chr19:1925226(+) A-I      3'UTR chr19:1925224(+) A-I      3'UTR chr19:1925177(+) A-I      3'UTR chr19:1917255(+) A-I      intronic chr19:1916607(+) A-I      intronic chr19:1916159(+) A-I      intronic chr19:1917099(+) A-I      intronic chr19:1916127(+) A-I      intronic chr19:1915890(+) A-I      intronic chr19:1921820(+) A-I      intronic chr19:1915988(+) A-I      intronic chr19:1915824(+) A-I      intronic chr19:1916695(+) A-I      intronic chr19:1916719(+) A-I      intronic chr19:1916117(+) A-I      intronic chr19:1917122(+) A-I      intronic chr19:1916066(+) A-I      intronic chr19:1916544(+) A-I      intronic chr19:1917225(+) A-I      intronic chr19:1916508(+) A-I      intronic chr19:1916187(+) A-I      intronic chr19:1915691(+) A-I      intronic chr19:1917044(+) A-I      intronic chr19:1916587(+) A-I      intronic chr19:1925200(+) A-I      3'UTR chr19:1925196(+) A-I      3'UTR chr19:1916481(+) A-I      intronic chr19:1915989(+) A-I      intronic chr19:1917214(+) A-I      intronic chr19:1917233(+) A-I      intronic chr19:1916532(+) A-I      intronic chr19:1916123(+) A-I      intronic chr19:1916586(+) A-I      intronic chr19:1925197(+) A-I      3'UTR chr19:1916537(+) A-I      intronic chr19:1916090(+) A-I      intronic chr19:1925222(+) A-I      3'UTR chr19:1915690(+) A-I      intronic chr19:1922373(+) A-I      intronic chr19:1925122(+) A-I      3'UTR chr19:1917184(+) A-I      intronic chr19:1916527(+) A-I      intronic chr19:1916658(+) A-I      intronic chr19:1916483(+) A-I      intronic chr19:1917220(+) A-I      intronic chr19:1916056(+) A-I      intronic chr19:1916641(+) A-I      intronic chr19:1915866(+) A-I      intronic chr19:1917185(+) A-I      intronic chr19:1916140(+) A-I      intronic chr19:1922351(+) A-I      intronic chr19:1916603(+) A-I      intronic chr19:1917098(+) A-I      intronic chr19:1916597(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SCAMP4	chr19:1915989(+) A-I intron -    22327324 chr19:1916117(+) A-I intron -    22327324 chr19:1916587(+) A-I intron -    21960545 chr19:1916597(+) A-I intron -    21960545 chr19:1916603(+) A-I intron -    21960545 chr19:1915988(+) A-G intron -    22484847 chr19:1916483(+) A-G intron -    22484847 chr19:1916557(+) A-G intron -    22484847 chr19:1916558(+) A-G intron -    22484847 chr19:1916562(+) A-G intron -    22484847 chr19:1916597(+) A-G intron -    22484847 chr19:1916624(+) A-G intron -    22484847 chr19:1916658(+) A-G intron -    22484847 chr19:1916709(+) A-G intron -    22484847 chr19:1916731(+) A-G intron -    22484847 chr19:1917098(+) A-G intron -    22484847 chr19:1917122(+) A-G intron -    22484847 chr19:1917158(+) A-G intron -    22484847 chr19:1917184(+) A-G intron -    22484847 chr19:1917185(+) A-G intron -    22484847 chr19:1917220(+) A-G intron -    22484847 chr19:1917225(+) A-G intron -    22484847 chr19:1922525(+) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SCAMP4	chr19:1905400-1905401(+) m6A 5'UTR//exon       24284625//24981863 chr19:1905479-1905480(+) m6A exon//intron       24284625//24981863 chr19:1906240-1906241(+) m6A exon//intron       24981863 chr19:1906279-1906280(+) m6A exon//intron       24981863 chr19:1908032-1908033(+) m6A intron       24284625//24981863 chr19:1908055-1908056(+) m6A intron       24284625//24981863 chr19:1908089-1908090(+) m6A intron       24284625 chr19:1911899-1911900(+) m6A intron       24284625//25456834//24981863//22608085 chr19:1911948-1911949(+) m6A intron       24284625//25456834//24981863//22608085 chr19:1912009-1912010(+) m6A intron       24284625//25456834//24981863//22608085 chr19:1912248-1912249(+) m6A intron       24284625//25456834//24981863//22575960 chr19:1912259-1912260(+) m6A intron       24284625//25456834//24981863//22575960 chr19:1912440-1912441(+) m6A intron       24209618//25456834//22575960 chr19:1912551-1912552(+) m6A intron       24284625//25456834//22575960 chr19:1912695-1912696(+) m6A intron       24209618//25456834//24981863//22575960//22608085 chr19:1912707-1912708(+) m6A intron       24209618//25456834//24981863//22575960//22608085 chr19:1912746-1912747(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1912782-1912783(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1912825-1912826(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1912894-1912895(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1913136-1913137(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1913171-1913172(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1913208-1913209(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1913258-1913259(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:1913320-1913321(+) m6A 5'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr19:1913410-1913411(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr19:1913431-1913432(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr19:1913441-1913442(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr19:1924164-1924165(+) m6A CDS//exon       24284625 chr19:1924182-1924183(+) m6A CDS//exon       24284625 chr19:1924280-1924281(+) Y CDS//exon       26075521 chr19:1924417-1924418(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr19:1924445-1924446(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr19:1924616-1924617(+) m6A 3'UTR//exon       24284625 chr19:1924745-1924746(+) m6A 3'UTR//exon       24284625//24981863 chr19:1924934-1924935(+) m6A 3'UTR//exon       24284625 chr19:1924986-1924987(+) m6A 3'UTR//exon       24284625 chr19:1925318-1925319(+) m6A 3'UTR//exon       24284625//24209618 chr19:1925420-1925421(+) m6A 3'UTR//exon       24284625//24209618//24981863 chr19:1925501-1925502(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942 chr19:1925519-1925520(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr19:1925561-1925562(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr19:1925605-1925606(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr19:1925884-1925885(+) m6A 3'UTR//exon       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SCAMP4	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: SCAMP4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg