Detail Information

Basic Information:


  VIRBase ID:  

VHID00145857

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           TRIM4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p TRIM4
miRBase
Accession/Entrez ID		 MIMAT0015280 89122
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - RNF87

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRIM4
chr7:99492228(-) A-I      intronic
chr7:99502437(-) A-I      intronic
chr7:99502579(-) A-I      intronic
chr7:99504999(-) A-I      intronic
chr7:99503644(-) A-I      intronic
chr7:99490828(-) A-I      intronic
chr7:99512495(-) A-I      intronic
chr7:99503523(-) A-I      intronic
chr7:99490881(-) A-I      intronic
chr7:99507650(-) A-I      intronic
chr7:99504387(-) A-I      intronic
chr7:99503576(-) A-I      intronic
chr7:99504846(-) A-I      intronic
chr7:99490628(-) A-I      intronic
chr7:99512722(-) A-I      intronic
chr7:99490830(-) A-I      intronic
chr7:99511883(-) A-I      intronic
chr7:99512509(-) A-I      intronic
chr7:99504813(-) A-I      intronic
chr7:99512529(-) A-I      intronic
chr7:99492178(-) A-I      intronic
chr7:99492227(-) A-I      intronic
chr7:99512626(-) A-I      intronic
chr7:99504336(-) A-I      intronic
chr7:99510054(-) A-I      intronic
chr7:99504879(-) A-I      intronic
chr7:99502420(-) A-I      intronic
chr7:99507453(-) A-I      intronic
chr7:99504936(-) A-I      intronic
chr7:99507418(-) A-I      intronic
chr7:99511987(-) A-I      intronic
chr7:99507554(-) A-I      intronic
chr7:99507458(-) A-I      intronic
chr7:99504970(-) A-I      intronic
chr7:99505022(-) A-I      intronic
chr7:99492120(-) A-I      intronic
chr7:99515259(-) A-I      intronic
chr7:99507493(-) A-I      intronic
chr7:99504417(-) A-I      intronic
chr7:99507477(-) A-I      intronic
chr7:99512706(-) A-I      intronic
chr7:99512500(-) A-I      intronic
chr7:99507524(-) A-I      intronic
chr7:99490627(-) A-I      intronic
chr7:99504838(-) A-I      intronic
chr7:99502392(-) A-I      intronic
chr7:99504359(-) A-I      intronic
chr7:99502398(-) A-I      intronic
chr7:99512700(-) A-I      intronic
chr7:99497511(-) A-I      intronic
chr7:99502489(-) A-I      intronic
chr7:99504096(-) A-I      intronic
chr7:99490778(-) A-I      intronic
chr7:99490615(-) A-I      intronic
chr7:99507534(-) A-I      intronic
chr7:99504843(-) A-I      intronic
chr7:99504412(-) A-I      intronic
chr7:99512714(-) A-I      intronic
chr7:99492243(-) A-I      intronic
chr7:99507519(-) A-I      intronic
chr7:99492123(-) A-I      intronic
chr7:99503602(-) A-I      intronic
chr7:99503511(-) A-I      intronic
chr7:99503681(-) A-I      intronic
chr7:99512462(-) A-I      intronic
chr7:99504770(-) A-I      intronic
chr7:99502533(-) A-I      intronic
chr7:99511891(-) A-I      intronic
chr7:99504463(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRIM4
chr7:99504070(-) A-G intron -    22484847
chr7:99504757(-) A-C intron -    22484847
chr7:99504770(-) A-G intron -    22484847
chr7:99504837(-) A-G intron -    22484847
chr7:99504838(-) A-G intron -    22484847
chr7:99504843(-) A-G intron -    22484847
chr7:99504878(-) A-G intron -    22484847
chr7:99504879(-) A-G intron -    22484847
chr7:99510056(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRIM4
chr7:99489985-99489986(-) m6A CDS//intron       27773535
chr7:99490151-99490152(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr7:99490219-99490220(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr7:99490251-99490252(-) m6A CDS//intron       24981863//27773535//22608085
chr7:99490331-99490332(-) m6A CDS//intron       27773535
chr7:99490347-99490348(-) m6A CDS//intron       27773535
chr7:99490359-99490360(-) m6A CDS//intron       27773535
chr7:99498792-99498793(-) m6A 3'UTR//intron       27773535
chr7:99498806-99498807(-) m6A 3'UTR//intron       27773535
chr7:99498814-99498815(-) m6A 3'UTR//intron       27773535
chr7:99498914-99498915(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr7:99498954-99498955(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr7:99498962-99498963(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr7:99499005-99499006(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr7:99499118-99499119(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr7:99499179-99499180(-) m6A 3'UTR//intron       24981863//27773535
chr7:99499194-99499195(-) m6A 3'UTR//intron       24981863//27773535
chr7:99499312-99499313(-) m6A 3'UTR//intron       27773535
chr7:99499344-99499345(-) m6A 3'UTR//intron       27773535
chr7:99499488-99499489(-) m6A 3'UTR//intron       27773535
chr7:99499499-99499500(-) m6A 3'UTR//intron       27773535
chr7:99499556-99499557(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr7:99499575-99499576(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr7:99499596-99499597(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr7:99499635-99499636(-) m6A 3'UTR//intron       24981863//27773535
chr7:99499688-99499689(-) m6A 3'UTR//intron       24209618//27773535
chr7:99499751-99499752(-) m6A 3'UTR//intron       27773535
chr7:99499769-99499770(-) m6A CDS//intron       27773535
chr7:99499774-99499775(-) m6A CDS//intron       27773535
chr7:99499782-99499783(-) m6A CDS//intron       27773535
chr7:99500888-99500889(-) m6A CDS       27773535
chr7:99506278-99506279(-) m6A CDS//exon       24981863//27773535
chr7:99506288-99506289(-) m6A CDS//exon       24981863//27773535
chr7:99506298-99506299(-) m6A CDS//exon       24981863//27773535
chr7:99506337-99506338(-) m6A CDS//exon       24981863//27773535
chr7:99506358-99506359(-) m6A CDS//exon       24981863//27773535
chr7:99516675-99516676(-) m6A CDS       27371828//27773536
chr7:99516962-99516963(-) m6A CDS       27371828//27773536
chr7:99516974-99516975(-) m6A CDS       27371828//27773536
chr7:99517010-99517011(-) m6A CDS       27371828//27773536
chr7:99517050-99517051(-) m6A 5'UTR       24981863//27371828//27773536
chr7:99517155-99517156(-) m6A 5'UTR       24981863
chr7:99517169-99517170(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRIM4
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: TRIM4

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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