Detail Information

Basic Information:


  VIRBase ID:  

VHID00145664

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           CCDC3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p CCDC3
miRBase
Accession/Entrez ID		 MIMAT0015280 83643
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC3
chr10:13036981(-) A-I      intronic
chr10:13036973(-) A-I      intronic
chr10:13036915(-) A-I      intronic
chr10:12952773(-) A-I      intronic
chr10:12952798(-) A-I      intronic
chr10:12960886(-) A-I      intronic
chr10:12961446(-) A-I      intronic
chr10:12961462(-) A-I      intronic
chr10:12961468(-) A-I      intronic
chr10:12963881(-) A-I      intronic
chr10:12963961(-) A-I      intronic
chr10:12973148(-) A-I      intronic
chr10:12973159(-) A-I      intronic
chr10:13037051(-) A-I      intronic
chr10:12993191(-) A-I      intronic
chr10:13001347(-) A-I      intronic
chr10:13005683(-) A-I      intronic
chr10:13006320(-) A-I      intronic
chr10:13006325(-) A-I      intronic
chr10:13006326(-) A-I      intronic
chr10:13013888(-) A-I      intronic
chr10:13013892(-) A-I      intronic
chr10:13013902(-) A-I      intronic
chr10:13013907(-) A-I      intronic
chr10:13023092(-) A-I      intronic
chr10:13023100(-) A-I      intronic
chr10:13005809(-) A-I      intronic
chr10:13023105(-) A-I      intronic
chr10:13024015(-) A-I      intronic
chr10:13025400(-) A-I      intronic
chr10:13028585(-) A-I      intronic
chr10:13028610(-) A-I      intronic
chr10:13036303(-) A-I      intronic
chr10:13036918(-) A-I      intronic
chr10:13012694(-) A-I      intronic
chr10:13036924(-) A-I      intronic
chr10:13037366(-) A-I      intronic
chr10:13037374(-) A-I      intronic
chr10:13037515(-) A-I      intronic
chr10:13031695(-) A-I      intronic
chr10:13037523(-) A-I      intronic
chr10:13038396(-) A-I      intronic
chr10:13024011(-) A-I      intronic
chr10:13001441(-) A-I      intronic
chr10:13031518(-) A-I      intronic
chr10:12981388(-) A-I      intronic
chr10:12978497(-) A-I      intronic
chr10:12981479(-) A-I      intronic
chr10:13014685(-) A-I      intronic
chr10:13023122(-) A-I      intronic
chr10:13030445(-) A-I      intronic
chr10:13031559(-) A-I      intronic
chr10:13024001(-) A-I      intronic
chr10:12981387(-) A-I      intronic
chr10:12978867(-) A-I      intronic
chr10:12952790(-) A-I      intronic
chr10:13036998(-) A-I      intronic
chr10:13014606(-) A-I      intronic
chr10:13006250(-) A-I      intronic
chr10:13001988(-) A-I      intronic
chr10:13032130(-) A-I      intronic
chr10:13038509(-) A-I      intronic
chr10:12961333(-) A-I      intronic
chr10:12977050(-) A-I      intronic
chr10:13033500(-) A-I      intronic
chr10:13025835(-) A-I      intronic
chr10:12950820(-) A-I      intronic
chr10:13031688(-) A-I      intronic
chr10:13032085(-) A-I      intronic
chr10:13013791(-) A-I      intronic
chr10:13023145(-) A-I      intronic
chr10:13005708(-) A-I      intronic
chr10:13033358(-) A-I      intronic
chr10:13013824(-) A-I      intronic
chr10:12993197(-) A-I      intronic
chr10:12973089(-) A-I      intronic
chr10:12952664(-) A-I      intronic
chr10:13021455(-) A-I      intronic
chr10:13005648(-) A-I      intronic
chr10:13001350(-) A-I      intronic
chr10:13031489(-) A-I      intronic
chr10:13014695(-) A-I      intronic
chr10:12993304(-) A-I      intronic
chr10:13023248(-) A-I      intronic
chr10:13037013(-) A-I      intronic
chr10:13021569(-) A-I      intronic
chr10:13001356(-) A-I      intronic
chr10:13032194(-) A-I      intronic
chr10:13014559(-) A-I      intronic
chr10:13021644(-) A-I      intronic
chr10:12981511(-) A-I      intronic
chr10:12977153(-) A-I      intronic
chr10:13036969(-) A-I      intronic
chr10:12952734(-) A-I      intronic
chr10:12997911(-) A-I      intronic
chr10:13021542(-) A-I      intronic
chr10:13021510(-) A-I      intronic
chr10:12978918(-) A-I      intronic
chr10:13014705(-) A-I      intronic
chr10:13037424(-) A-I      intronic
chr10:13001346(-) A-I      intronic
chr10:12993254(-) A-I      intronic
chr10:12959223(-) A-I      intronic
chr10:13034233(-) A-I      intronic
chr10:13034164(-) A-I      intronic
chr10:13012689(-) A-I      intronic
chr10:13036933(-) A-I      intronic
chr10:13006210(-) A-I      intronic
chr10:13021485(-) A-I      intronic
chr10:13033503(-) A-I      intronic
chr10:12942406(-) A-I      intronic
chr10:12964018(-) A-I      intronic
chr10:12993306(-) A-I      intronic
chr10:12946210(-) A-I      intronic
chr10:13037043(-) A-I      intronic
chr10:13037327(-) A-I      intronic
chr10:12952677(-) A-I      intronic
chr10:13005856(-) A-I      intronic
chr10:12977762(-) A-I      intronic
chr10:13023251(-) A-I      intronic
chr10:12981514(-) A-I      intronic
chr10:13033515(-) A-I      intronic
chr10:13023348(-) A-I      intronic
chr10:13012622(-) A-I      intronic
chr10:13028096(-) A-I      intronic
chr10:12943562(-) A-I      intronic
chr10:12942993(-) A-I      intronic
chr10:12977284(-) A-I      intronic
chr10:13028196(-) A-I      intronic
chr10:13008344(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC3
chr10:12939533-12939534(-) m6A 3'UTR       24209618//22608085
chr10:12939545-12939546(-) m6A 3'UTR       24209618//22608085
chr10:12939576-12939577(-) m6A 3'UTR       24209618//22608085
chr10:12939648-12939649(-) m6A 3'UTR       24209618//22608085
chr10:12939670-12939671(-) m6A 3'UTR       24209618//22608085
chr10:13043691-13043692(-) m6A 5'UTR//intron       24209618
chr10:13091686-13091687(-) m6A 5'UTR       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CCDC3
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: CCDC3

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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