Basic Information:

  VIRBase ID:  

VHID00145466

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          VTCN1:  NR_045603     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	VTCN1
miRBase Accession/Entrez ID	MIMAT0015280	79679
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B7-H4//B7h.5//B7H4//B7S1//B7X//PRO1291//VCTN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VTCN1	chr1:117720976(-) A-I      intronic chr1:117747876(-) A-I      intronic chr1:117720690(-) A-I      intronic chr1:117720912(-) A-I      intronic chr1:117720621(-) A-I      intronic chr1:117720721(-) A-I      intronic chr1:117720947(-) A-I      intronic chr1:117720760(-) A-I      intronic chr1:117721152(-) A-I      intronic chr1:117720883(-) A-I      intronic chr1:117721130(-) A-I      intronic chr1:117729925(-) A-I      intronic chr1:117719609(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VTCN1	chr1:117708409(-) A-I intron -    21960545 chr1:117711437(-) A-I intron -    21960545 chr1:117711450(-) A-I intron -    21960545 chr1:117711489(-) A-I intron -    21960545 chr1:117711490(-) A-I intron -    21960545 chr1:117711492(-) A-I intron -    21960545 chr1:117712293(-) A-I intron -    21960545 chr1:117712401(-) A-I intron -    21960545 chr1:117712435(-) A-I intron -    21960545 chr1:117712511(-) A-I intron -    21960545 chr1:117712513(-) A-I intron -    21960545 chr1:117719553(-) A-I intron -    21960545 chr1:117719555(-) A-I intron -    21960545 chr1:117719637(-) A-I intron -    21960545 chr1:117742806(-) A-I intron -    21960545 chr1:117742854(-) A-I intron -    21960545 chr1:117742858(-) A-I intron -    21960545 chr1:117743611(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VTCN1	chr1:117686307-117686308(-) m6A 3'UTR       24981863 chr1:117686417-117686418(-) m6A 3'UTR       24981863 chr1:117686433-117686434(-) m6A 3'UTR       24981863 chr1:117686461-117686462(-) m6A 3'UTR       24981863 chr1:117686496-117686497(-) m6A 3'UTR       24981863 chr1:117686977-117686978(-) m6A 3'UTR       24981863 chr1:117687025-117687026(-) m6A 3'UTR       24981863 chr1:117687058-117687059(-) m6A 3'UTR       24981863 chr1:117687067-117687068(-) m6A 3'UTR       24981863 chr1:117695943-117695944(-) m6A CDS//exon       24981863 chr1:117695963-117695964(-) m6A CDS//exon       24981863 chr1:117699201-117699202(-) m6A CDS//exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VTCN1	Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: VTCN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg