Basic Information:

  VIRBase ID:  

VHID00145357

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          DDX31:  NM_001322343     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	DDX31
miRBase Accession/Entrez ID	MIMAT0015280	64794
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PPP1R25

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DDX31	chr9:135542866(-) A-I      intronic chr9:135488549(-) A-I      intronic chr9:135488487(-) A-I      intronic chr9:135539861(-) A-I      intronic chr9:135489074(-) A-I      intronic chr9:135489005(-) A-I      intronic chr9:135542868(-) A-I      intronic chr9:135544093(-) A-I      intronic chr9:135542933(-) A-I      intronic chr9:135542878(-) A-I      intronic chr9:135542890(-) A-I      intronic chr9:135488878(-) A-I      intronic chr9:135544119(-) A-I      intronic chr9:135488468(-) A-I      intronic chr9:135511245(-) A-I      intronic chr9:135529763(-) A-I      intronic chr9:135488392(-) A-I      intronic chr9:135488432(-) A-I      intronic chr9:135542988(-) A-I      intronic chr9:135542798(-) A-I      intronic chr9:135529753(-) A-I      intronic chr9:135510962(-) A-I      intronic chr9:135542908(-) A-I      intronic chr9:135542275(-) A-I      intronic chr9:135510910(-) A-I      intronic chr9:135542515(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DDX31	chr9:135498478(-) C-T intron -    22484847 chr9:135542275(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DDX31	chr9:135469720-135469721(-) m6A 3'UTR//exon       27773535 chr9:135469800-135469801(-) m6A 3'UTR//exon       27773535//22608085 chr9:135470048-135470049(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:135470227-135470228(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:135470269-135470270(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:135470277-135470278(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:135470299-135470300(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:135470317-135470318(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:135470468-135470469(-) m6A CDS//exon       24284625//27773535 chr9:135470479-135470480(-) m6A CDS//exon       24284625//27773535 chr9:135487498-135487499(-) Am CDS//exon       - chr9:135487538-135487539(-) m6A CDS//exon       24284625//27773535 chr9:135487685-135487686(-) m6A exon//intron       27773535 chr9:135537833-135537834(-) m6A CDS//exon       24284625//27773535//22608085 chr9:135537852-135537853(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr9:135537871-135537872(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr9:135537884-135537885(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:135537897-135537898(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:135537964-135537965(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:135537973-135537974(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:135537988-135537989(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:135538012-135538013(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:135538699-135538700(-) m6A intron       27773535//27371828 chr9:135545323-135545324(-) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960 chr9:135545429-135545430(-) m6A CDS//exon       24284625//25456834//24981863//27773536//22575960//22608085 chr9:135545583-135545584(-) m6A CDS//exon       24284625//25456834//24981863//22575960 chr9:135545701-135545702(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DDX31	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: DDX31

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg