Basic Information:

  VIRBase ID:  

VHID00144932

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          PLXNA3:  NM_017514     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	PLXNA3
miRBase Accession/Entrez ID	MIMAT0015280	55558
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	6.3//HSSEXGENE//PLXN3//PLXN4//XAP-6

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PLXNA3	chrX:153686764-153686765(+) m6A 5'UTR//exon       - chrX:153688611-153688612(+) m6A CDS//intron       24284625//22575960//22608085 chrX:153688674-153688675(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chrX:153688740-153688741(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chrX:153688803-153688804(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chrX:153688830-153688831(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chrX:153689094-153689095(+) m6A CDS//intron       24284625//22575960 chrX:153689103-153689104(+) m6A CDS//intron       24284625//22575960 chrX:153689484-153689485(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chrX:153689574-153689575(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:153689595-153689596(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:153689649-153689650(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:153689823-153689824(+) m6A CDS       24284625 chrX:153689846-153689847(+) m6A CDS       24284625 chrX:153689952-153689953(+) m6A CDS       24284625 chrX:153690742-153690743(+) Cm intron       - chrX:153693439-153693440(+) m6A CDS       24284625 chrX:153693469-153693470(+) m6A CDS       24284625 chrX:153694833-153694834(+) m6A CDS//exon       - chrX:153695093-153695094(+) m6A CDS//exon       - chrX:153695427-153695428(+) m6A CDS//exon       - chrX:153695484-153695485(+) m6A CDS//exon       - chrX:153696305-153696306(+) m6A CDS       - chrX:153697274-153697275(+) m6A CDS//exon       - chrX:153697306-153697307(+) m6A CDS//exon       - chrX:153697498-153697499(+) m6A CDS//exon       - chrX:153697546-153697547(+) m6A CDS//exon       - chrX:153697552-153697553(+) m6A CDS//exon       - chrX:153699277-153699278(+) m6A exon//intron       - chrX:153699294-153699295(+) m6A exon//intron       - chrX:153700995-153700996(+) Cm CDS//exon       - chrX:153701294-153701295(+) m6A 3'UTR       24284625//24981863 chrX:153701346-153701347(+) m6A 3'UTR       24284625//24981863 chrX:153701607-153701608(+) m6A 3'UTR       24284625//25456834//24981863 chrX:153701668-153701669(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chrX:153701713-153701714(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chrX:153703865-153703866(+) m6A 3'UTR       - chrX:153703885-153703886(+) m6A 3'UTR       - chrX:153703904-153703905(+) m6A 3'UTR       - chrX:153703909-153703910(+) m6A 3'UTR       - chrX:153703979-153703980(+) m6A 3'UTR       - chrX:153704039-153704040(+) m6A 3'UTR       - chrX:153704044-153704045(+) m6A 3'UTR       - chrX:153704987-153704988(+) m6A 3'UTR       - chrX:153705014-153705015(+) m6A 3'UTR       - chrX:153705041-153705042(+) m6A 3'UTR       - chrX:153705050-153705051(+) m6A 3'UTR       - chrX:153705055-153705056(+) m6A 3'UTR       - chrX:153705086-153705087(+) m6A 3'UTR       - chrX:153705108-153705109(+) m6A 3'UTR       - chrX:153705132-153705133(+) m6A 3'UTR       - chrX:153705194-153705195(+) m6A 3'UTR       - chrX:153705202-153705203(+) m6A 3'UTR       - chrX:153705217-153705218(+) m6A 3'UTR       - chrX:153705261-153705262(+) m6A 3'UTR       - chrX:153705292-153705293(+) m6A 3'UTR       - chrX:153705334-153705335(+) m6A 3'UTR       - chrX:153705379-153705380(+) m6A 3'UTR       - chrX:153705440-153705441(+) m6A 3'UTR       - chrX:153705446-153705447(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PLXNA3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: PLXNA3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg