Basic Information:

  VIRBase ID:  

VHID00144676

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          TNFRSF12A:  NM_016639     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	TNFRSF12A
miRBase Accession/Entrez ID	MIMAT0015280	51330
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD266//FN14//TWEAKR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNFRSF12A	chr16:3072242(+) A-I      3'UTR chr16:3072245(+) A-I      3'UTR chr16:3072286(+) A-I      3'UTR chr16:3072284(+) A-I      3'UTR chr16:3072264(+) A-I      3'UTR chr16:3072248(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNFRSF12A	chr16:3070372-3070373(+) m6A 5'UTR//intron       24284625//24981863 chr16:3070501-3070502(+) m6A CDS//exon//intron       24284625//24981863//22575960 chr16:3070517-3070518(+) m6A CDS//exon//intron       24284625//22575960 chr16:3070543-3070544(+) m6A CDS//exon//intron       24284625//22575960 chr16:3070559-3070560(+) m6A CDS//exon//intron       24284625 chr16:3070569-3070570(+) m6A CDS//exon//intron       24284625 chr16:3070578-3070579(+) m6A CDS//exon//intron       24284625 chr16:3070617-3070618(+) m6A CDS//exon//intron       25456834 chr16:3071160-3071161(+) m6A CDS//exon//intron       22575960 chr16:3071254-3071255(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr16:3071260-3071261(+) m6A 5'UTR//CDS//exon//intron       24284625//22575960 chr16:3071272-3071273(+) m6A CDS//exon//intron       24284625//22575960 chr16:3071785-3071786(+) m6A 3'UTR//CDS//exon       24284625//24209618//22575960 chr16:3071990-3071991(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:3072030-3072031(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:3072063-3072064(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr16:3072084-3072085(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr16:3072160-3072161(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960 chr16:3072231-3072232(+) m6A 3'UTR//exon       24284625//26404942//27773535//22575960 chr16:3072287-3072288(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TNFRSF12A	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: TNFRSF12A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg