Detail Information

Basic Information:


  VIRBase ID:  

VHID00144486

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           TAF5L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p TAF5L
miRBase
Accession/Entrez ID		 MIMAT0015280 27097
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - PAF65B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TAF5L
chr1:229731939(-) A-I      intronic
chr1:229740843(-) A-I      intronic
chr1:229758897(-) A-I      intronic
chr1:229758574(-) A-I      intronic
chr1:229731799(-) A-I      intronic
chr1:229731550(-) A-I      intronic
chr1:229731852(-) A-I      intronic
chr1:229731551(-) A-I      intronic
chr1:229731886(-) A-I      intronic
chr1:229731803(-) A-I      intronic
chr1:229731945(-) A-I      intronic
chr1:229731926(-) A-I      intronic
chr1:229731851(-) A-I      intronic
chr1:229758630(-) A-I      intronic
chr1:229744740(-) A-I      intronic
chr1:229731912(-) A-I      intronic
chr1:229758899(-) A-I      intronic
chr1:229731938(-) A-I      intronic
chr1:229731764(-) A-I      intronic
chr1:229731969(-) A-I      intronic
chr1:229731687(-) A-I      intronic
chr1:229749043(-) A-I      intronic
chr1:229731899(-) A-I      intronic
chr1:229731685(-) A-I      intronic
chr1:229731524(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TAF5L
chr1:229731912(-) A-G intron -    22484847
chr1:229731926(-) A-G intron -    22484847
chr1:229731945(-) A-G intron -    22484847
chr1:229731969(-) A-G intron -    22484847
chr1:229758899(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TAF5L
chr1:229728979-229728980(-) m6A 3'UTR       24981863//22608085
chr1:229729011-229729012(-) m6A 3'UTR       24981863//22608085
chr1:229729023-229729024(-) m6A 3'UTR       24981863//22608085
chr1:229729062-229729063(-) m6A 3'UTR       24981863//22608085
chr1:229729427-229729428(-) Y 3'UTR       26075521
chr1:229729784-229729785(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:229729855-229729856(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:229730020-229730021(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229730049-229730050(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229730191-229730192(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730200-229730201(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730221-229730222(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730251-229730252(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:229730281-229730282(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:229730312-229730313(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:229730326-229730327(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730347-229730348(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730437-229730438(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730468-229730469(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730497-229730498(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:229730524-229730525(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:229730541-229730542(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:229730641-229730642(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:229730667-229730668(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:229730725-229730726(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730755-229730756(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229730784-229730785(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:229734954-229734955(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:229735022-229735023(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr1:229735233-229735234(-) m6A 3'UTR//intron       27773535//22608085
chr1:229735331-229735332(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:229735448-229735449(-) m6A 3'UTR//intron       24981863
chr1:229735739-229735740(-) m6A 3'UTR//intron       24981863
chr1:229735744-229735745(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr1:229735762-229735763(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr1:229735784-229735785(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr1:229735837-229735838(-) m6A 3'UTR//intron       24981863//22608085
chr1:229735872-229735873(-) m6A 3'UTR//intron       24981863//22608085
chr1:229736292-229736293(-) m6A 3'UTR//intron       24981863
chr1:229736302-229736303(-) m6A 3'UTR//intron       24981863
chr1:229736329-229736330(-) m6A 3'UTR//intron       24981863
chr1:229736380-229736381(-) m6A 3'UTR//intron       24981863//27773535
chr1:229737282-229737283(-) m6A 3'UTR//intron       -
chr1:229737757-229737758(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:229737818-229737819(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr1:229737854-229737855(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr1:229737875-229737876(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr1:229738034-229738035(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:229738098-229738099(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:229738254-229738255(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:229738300-229738301(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:229738404-229738405(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr1:229738470-229738471(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:229738480-229738481(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:229738489-229738490(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:229738584-229738585(-) m6A CDS       24284625//27773535//22608085
chr1:229750117-229750118(-) m6A CDS//exon       24209618
chr1:229750133-229750134(-) m6A CDS//exon       24209618
chr1:229750158-229750159(-) m6A CDS//exon       24209618
chr1:229761717-229761718(-) m6A 5'UTR//exon       24284625//24209618//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TAF5L
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: TAF5L

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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