Basic Information:

  VIRBase ID:  

VHID00144130

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          DLGAP4:  NM_001388274     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	DLGAP4
miRBase Accession/Entrez ID	MIMAT0015280	22839
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DAP-4//DAP4//DLP4//SAPAP-4//SAPAP4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DLGAP4	chr20:35105246(+) A-I      intronic chr20:35105242(+) A-I      intronic chr20:35105204(+) A-I      intronic chr20:35109249(+) A-I      intronic chr20:35117045(+) A-I      intronic chr20:35117081(+) A-I      intronic chr20:35117130(+) A-I      intronic chr20:35117110(+) A-I      intronic chr20:35092761(+) A-I      intronic chr20:35105249(+) A-I      intronic chr20:35104445(+) A-I      intronic chr20:35103886(+) A-I      intronic chr20:35103823(+) A-I      intronic chr20:35103674(+) A-I      intronic chr20:35102091(+) A-I      intronic chr20:35102073(+) A-I      intronic chr20:35092699(+) A-I      intronic chr20:35053208(+) A-I      intronic chr20:35053202(+) A-I      intronic chr20:35052274(+) A-I      intronic chr20:35148408(+) A-I      intronic chr20:35148306(+) A-I      intronic chr20:35148258(+) A-I      intronic chr20:35148250(+) A-I      intronic chr20:35116524(+) A-I      intronic chr20:35116456(+) A-I      intronic chr20:35116441(+) A-I      intronic chr20:35115289(+) A-I      intronic chr20:35146557(+) A-I      intronic chr20:35115267(+) A-I      intronic chr20:35115195(+) A-I      intronic chr20:35115107(+) A-I      intronic chr20:35115093(+) A-I      intronic chr20:35111175(+) A-I      intronic chr20:35111174(+) A-I      intronic chr20:35111155(+) A-I      intronic chr20:35109305(+) A-I      intronic chr20:35130915(+) A-I      intronic chr20:35109298(+) A-I      intronic chr20:35109247(+) A-I      intronic chr20:35109039(+) A-I      intronic chr20:35104471(+) A-I      intronic chr20:35109029(+) A-I      intronic chr20:35108993(+) A-I      intronic chr20:35108983(+) A-I      intronic chr20:35108971(+) A-I      intronic chr20:35104824(+) A-I      intronic chr20:35104811(+) A-I      intronic chr20:35104496(+) A-I      intronic chr20:35104482(+) A-I      intronic chr20:35146484(+) A-I      intronic chr20:35146553(+) A-I      intronic chr20:35146545(+) A-I      intronic chr20:35146503(+) A-I      intronic chr20:35146487(+) A-I      intronic chr20:35146476(+) A-I      intronic chr20:35146467(+) A-I      intronic chr20:35146423(+) A-I      intronic chr20:35145581(+) A-I      intronic chr20:35145549(+) A-I      intronic chr20:35145532(+) A-I      intronic chr20:35145510(+) A-I      intronic chr20:35145373(+) A-I      intronic chr20:35134064(+) A-I      intronic chr20:35133977(+) A-I      intronic chr20:35133963(+) A-I      intronic chr20:35133667(+) A-I      intronic chr20:35133592(+) A-I      intronic chr20:35133589(+) A-I      intronic chr20:35133530(+) A-I      intronic chr20:35130893(+) A-I      intronic chr20:35115212(+) A-I      intronic chr20:35130856(+) A-I      intronic chr20:35124538(+) A-I      intronic chr20:35124537(+) A-I      intronic chr20:35124527(+) A-I      intronic chr20:35124405(+) A-I      intronic chr20:35119544(+) A-I      intronic chr20:35119492(+) A-I      intronic chr20:35119456(+) A-I      intronic chr20:35119394(+) A-I      intronic chr20:35119387(+) A-I      intronic chr20:35118535(+) A-I      intronic chr20:35118397(+) A-I      intronic chr20:35118391(+) A-I      intronic chr20:35118379(+) A-I      intronic chr20:35118362(+) A-I      intronic chr20:35118361(+) A-I      intronic chr20:35118336(+) A-I      intronic chr20:35118301(+) A-I      intronic chr20:35117190(+) A-I      intronic chr20:35117166(+) A-I      intronic chr20:35117155(+) A-I      intronic chr20:35117142(+) A-I      intronic chr20:35117138(+) A-I      intronic chr20:35117074(+) A-I      intronic chr20:35116547(+) A-I      intronic chr20:35123267(+) A-I      intronic chr20:35116535(+) A-I      intronic chr20:35148427(+) A-I      intronic chr20:35054213(+) A-I      intronic chr20:35109154(+) A-I      intronic chr20:35133597(+) A-I      intronic chr20:35133471(+) A-I      intronic chr20:35086058(+) A-I      intronic chr20:35077249(+) A-I      intronic chr20:35079775(+) A-I      intronic chr20:35072711(+) A-I      intronic chr20:35098005(+) A-I      intronic chr20:35053319(+) A-I      intronic chr20:35092729(+) A-I      intronic chr20:35105316(+) A-I      intronic chr20:35081613(+) A-I      intronic chr20:35117164(+) A-I      intronic chr20:35103874(+) A-I      intronic chr20:35092989(+) A-I      intronic chr20:35077287(+) A-I      intronic chr20:35046573(+) A-I      intronic chr20:35139143(+) A-I      intronic chr20:35076085(+) A-I      intronic chr20:35004445(+) A-I      intronic chr20:35129504(+) A-I      intronic chr20:35103634(+) A-I      intronic chr20:35081891(+) A-I      intronic chr20:35117120(+) A-I      intronic chr20:35134028(+) A-I      intronic chr20:35134027(+) A-I      intronic chr20:35111258(+) A-I      intronic chr20:35109088(+) A-I      intronic chr20:35027341(+) A-I      intronic chr20:35117044(+) A-I      intronic chr20:35109053(+) A-I      intronic chr20:35109366(+) A-I      intronic chr20:35088654(+) A-I      intronic chr20:35097978(+) A-I      intronic chr20:35145631(+) A-I      intronic chr20:35131402(+) A-I      intronic chr20:35051609(+) A-I      intronic chr20:35081795(+) A-I      intronic chr20:35053304(+) A-I      intronic chr20:35048973(+) A-I      intronic chr20:35111152(+) A-I      intronic chr20:35105301(+) A-I      intronic chr20:34998631(+) A-I      intronic chr20:34998648(+) A-I      intronic chr20:35148252(+) A-I      intronic chr20:35108873(+) A-I      intronic chr20:35076624(+) A-I      intronic chr20:35133527(+) A-I      intronic chr20:35118532(+) A-I      intronic chr20:35116349(+) A-I      intronic chr20:35081093(+) A-I      intronic chr20:35103714(+) A-I      intronic chr20:35104288(+) A-I      intronic chr20:35102115(+) A-I      intronic chr20:35010646(+) A-I      intronic chr20:35056126(+) A-I      intronic chr20:35081741(+) A-I      intronic chr20:35116496(+) A-I      intronic chr20:35092753(+) A-I      intronic chr20:35123259(+) A-I      intronic chr20:35105226(+) A-I      intronic chr20:35081052(+) A-I      intronic chr20:35115078(+) A-I      intronic chr20:35117027(+) A-I      intronic chr20:35117093(+) A-I      intronic chr20:35129549(+) A-I      intronic chr20:35038425(+) A-I      intronic chr20:35103794(+) A-I      intronic chr20:35109097(+) A-I      intronic chr20:35066424(+) A-I      intronic chr20:35103713(+) A-I      intronic chr20:35117227(+) A-I      intronic chr20:35004340(+) A-I      intronic chr20:35103718(+) A-I      intronic chr20:35079937(+) A-I      intronic chr20:35081457(+) A-I      intronic chr20:35097985(+) A-I      intronic chr20:35109139(+) A-I      intronic chr20:35109244(+) A-I      intronic chr20:35123528(+) A-I      intronic chr20:35115277(+) A-I      intronic chr20:35117106(+) A-I      intronic chr20:35082495(+) A-I      intronic chr20:35118409(+) A-I      intronic chr20:35062316(+) A-I      intronic chr20:35092734(+) A-I      intronic chr20:35145922(+) A-I      intronic chr20:35109193(+) A-I      intronic chr20:35081895(+) A-I      intronic chr20:35008403(+) A-I      intronic chr20:35133976(+) A-I      intronic chr20:35086180(+) A-I      intronic chr20:35109311(+) A-I      intronic chr20:35134132(+) A-I      intronic chr20:35081956(+) A-I      intronic chr20:35053264(+) A-I      intronic chr20:35015074(+) A-I      intronic chr20:35037464(+) A-I      intronic chr20:35103779(+) A-I      intronic chr20:35081888(+) A-I      intronic chr20:35105592(+) A-I      intronic chr20:35079847(+) A-I      intronic chr20:35097996(+) A-I      intronic chr20:35080661(+) A-I      intronic chr20:35134110(+) A-I      intronic chr20:35079773(+) A-I      intronic chr20:35077258(+) A-I      intronic chr20:35077243(+) A-I      intronic chr20:35115288(+) A-I      intronic chr20:35103753(+) A-I      intronic chr20:35004661(+) A-I      intronic chr20:35109227(+) A-I      intronic chr20:35080817(+) A-I      intronic chr20:35093182(+) A-I      intronic chr20:35119524(+) A-I      intronic chr20:35109176(+) A-I      intronic chr20:35105772(+) A-I      intronic chr20:35100702(+) A-I      intronic chr20:35057993(+) A-I      intronic chr20:35145617(+) A-I      intronic chr20:35145661(+) A-I      intronic chr20:35099663(+) A-I      intronic chr20:35104284(+) A-I      intronic chr20:35134102(+) A-I      intronic chr20:35111192(+) A-I      intronic chr20:35043397(+) A-I      intronic chr20:35085640(+) A-I      intronic chr20:35098077(+) A-I      intronic chr20:35077269(+) A-I      intronic chr20:35075917(+) A-I      intronic chr20:35133923(+) A-I      intronic chr20:35004381(+) A-I      intronic chr20:35118523(+) A-I      intronic chr20:35109294(+) A-I      intronic chr20:35109034(+) A-I      intronic chr20:35053359(+) A-I      intronic chr20:35049790(+) A-I      intronic chr20:35045888(+) A-I      intronic chr20:35097970(+) A-I      intronic chr20:35092842(+) A-I      intronic chr20:35132098(+) A-I      intronic chr20:35145892(+) A-I      intronic chr20:35076007(+) A-I      intronic chr20:35076004(+) A-I      intronic chr20:35098168(+) A-I      intronic chr20:35011207(+) A-I      intronic chr20:35037912(+) A-I      intronic chr20:35103666(+) A-I      intronic chr20:35133992(+) A-I      intronic chr20:35104442(+) A-I      intronic chr20:35037975(+) A-I      intronic chr20:35105580(+) A-I      intronic chr20:35049603(+) A-I      intronic chr20:35134021(+) A-I      intronic chr20:35077185(+) A-I      intronic chr20:35008335(+) A-I      intronic chr20:35057829(+) A-I      intronic chr20:35082496(+) A-I      intronic chr20:35111255(+) A-I      intronic chr20:35123239(+) A-I      intronic chr20:35133996(+) A-I      intronic chr20:35123262(+) A-I      intronic chr20:35079804(+) A-I      intronic chr20:35082016(+) A-I      intronic chr20:35100627(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DLGAP4	chr20:35097960(+) A-I intron -    15342557 chr20:35097970(+) A-I intron -    15342557 chr20:35097977(+) A-I intron -    15342557 chr20:35097978(+) A-I intron -    15342557 chr20:35097985(+) A-I intron -    15342557 chr20:35097996(+) A-I intron -    15342557 chr20:35098005(+) A-I intron -    15342557 chr20:35098561(+) A-I intron -    15342557 chr20:35137629(+) A-I intron -    22327324 chr20:35147189(+) A-I intron -    22327324 chr20:35102073(+) A-I intron -    21960545 chr20:35103714(+) A-G intron -    22484847 chr20:35103814(+) A-G intron -    22484847 chr20:35109140(+) A-G intron -    22484847 chr20:35109153(+) A-G intron -    22484847 chr20:35109154(+) A-G intron -    22484847 chr20:35109170(+) A-G intron -    22484847 chr20:35133905(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DLGAP4	chr20:35060268-35060269(+) m6A CDS       25456834 chr20:35060436-35060437(+) m6A CDS       25456834//24981863 chr20:35060885-35060886(+) m6A CDS       25456834 chr20:35060895-35060896(+) m6A CDS       25456834 chr20:35089841-35089842(+) m6A 5'UTR//intron       24981863 chr20:35089877-35089878(+) m6A 5'UTR//intron       24981863 chr20:35090373-35090374(+) m6A 5'UTR//intron       24284625 chr20:35121570-35121571(+) m6A 5'UTR//exon//intron       24981863 chr20:35125136-35125137(+) m6A 5'UTR//CDS//exon       24284625//24981863 chr20:35125218-35125219(+) m6A 5'UTR//CDS//exon       24284625//24981863 chr20:35125230-35125231(+) m6A 5'UTR//CDS//exon       24284625//24981863 chr20:35125239-35125240(+) m6A 5'UTR//CDS//exon       24284625//24981863 chr20:35125287-35125288(+) m6A 5'UTR//CDS//exon       24284625 chr20:35125296-35125297(+) m6A 5'UTR//CDS//exon       24284625 chr20:35125372-35125373(+) m6A 5'UTR//CDS//exon       24284625 chr20:35125393-35125394(+) m6A 5'UTR//CDS//exon       24284625 chr20:35125447-35125448(+) m6A 5'UTR//CDS//exon       24284625 chr20:35126466-35126467(+) m6A exon//intron       - chr20:35126539-35126540(+) m6A exon//intron       - chr20:35128639-35128640(+) m6A CDS//exon       24284625//24209618//24981863 chr20:35128645-35128646(+) m6A CDS//exon       24284625//24209618//24981863 chr20:35128705-35128706(+) m6A CDS//exon//intron       24284625//24209618//24981863 chr20:35128798-35128799(+) m6A CDS//exon//intron       24284625//24981863 chr20:35128857-35128858(+) m6A CDS//exon//intron       24284625 chr20:35128944-35128945(+) m6A CDS//exon       - chr20:35128978-35128979(+) m6A CDS//exon       - chr20:35128986-35128987(+) m6A CDS//exon       - chr20:35128996-35128997(+) m6A CDS//exon       - chr20:35154391-35154392(+) m6A CDS//exon       24981863//27371828 chr20:35154444-35154445(+) m6A CDS//exon//intron       24981863//27371828 chr20:35155226-35155227(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828 chr20:35155331-35155332(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr20:35155369-35155370(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155390-35155391(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155422-35155423(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:35155435-35155436(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:35155474-35155475(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:35155482-35155483(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:35155498-35155499(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:35155540-35155541(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155659-35155660(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155667-35155668(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155698-35155699(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155774-35155775(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:35155982-35155983(+) m6A 3'UTR       24284625 chr20:35155994-35155995(+) m6A 3'UTR       24284625 chr20:35156116-35156117(+) m6A 3'UTR       24284625 chr20:35156198-35156199(+) m6A 3'UTR       24284625 chr20:35156250-35156251(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DLGAP4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: DLGAP4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg