Detail Information

Basic Information:


  VIRBase ID:  

VHID00144077

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           RABL2B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p RABL2B
miRBase
Accession/Entrez ID		 MIMAT0015280 11158
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RABL2B
chr22:51208828(-) A-I      ncRNA
chr22:51208752(-) A-I      ncRNA
chr22:51208699(-) A-I      ncRNA
chr22:51210535(-) A-I      3'UTR
chr22:51209525(-) A-I      intronic
chr22:51209555(-) A-I      intronic
chr22:51209609(-) A-I      intronic
chr22:51209615(-) A-I      intronic
chr22:51209631(-) A-I      intronic
chr22:51208833(-) A-I      ncRNA
chr22:51210595(-) A-I      3'UTR
chr22:51209639(-) A-I      3'UTR
chr22:51210586(-) A-I      3'UTR
chr22:51208781(-) A-I      ncRNA
chr22:51210201(-) A-I      3'UTR
chr22:51210197(-) A-I      3'UTR
chr22:51210742(-) A-I      3'UTR
chr22:51209833(-) A-I      3'UTR
chr22:51210652(-) A-I      3'UTR
chr22:51210636(-) A-I      3'UTR
chr22:51210590(-) A-I      3'UTR
chr22:51210175(-) A-I      3'UTR
chr22:51208739(-) A-I      ncRNA
chr22:51208709(-) A-I      ncRNA
chr22:51208741(-) A-I      ncRNA
chr22:51208727(-) A-I      ncRNA
chr22:51209869(-) A-I      3'UTR
chr22:51210630(-) A-I      3'UTR
chr22:51209865(-) A-I      3'UTR
chr22:51210582(-) A-I      3'UTR
chr22:51208796(-) A-I      ncRNA
chr22:51210569(-) A-I      3'UTR
chr22:51210627(-) A-I      3'UTR
chr22:51209635(-) A-I      intronic
chr22:51209991(-) A-I      3'UTR
chr22:51209697(-) A-I      3'UTR
chr22:51209638(-) A-I      3'UTR
chr22:51210594(-) A-I      3'UTR
chr22:51208868(-) A-I      ncRNA
chr22:51208858(-) A-I      ncRNA
chr22:51208817(-) A-I      ncRNA
chr22:51208823(-) A-I      ncRNA
chr22:51208906(-) A-I      ncRNA
chr22:51208740(-) A-I      ncRNA
chr22:51208774(-) A-I      ncRNA
chr22:51208797(-) A-I      ncRNA
chr22:51208845(-) A-I      ncRNA
chr22:51208837(-) A-I      ncRNA
chr22:51208708(-) A-I      ncRNA
chr22:51208769(-) A-I      ncRNA
chr22:51208859(-) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RABL2B
chr22:51208708(-) A-I intron -    15342557
chr22:51208709(-) A-I intron -    15342557
chr22:51208727(-) A-I intron -    15258596
chr22:51208739(-) A-I intron -    15342557
chr22:51208740(-) A-I intron -    15342557
chr22:51208741(-) A-I intron -    15342557
chr22:51208769(-) A-I intron -    15342557
chr22:51208774(-) A-I intron -    15342557
chr22:51208781(-) A-I intron -    15342557
chr22:51208796(-) A-I intron -    15342557   //15258596
chr22:51208797(-) A-I intron -    15342557
chr22:51208801(-) A-I intron -    15342557
chr22:51208807(-) A-I intron -    15258596
chr22:51208817(-) A-I intron -    15342557
chr22:51208823(-) A-I intron -    15342557
chr22:51208833(-) A-I intron -    15342557
chr22:51208836(-) A-I intron -    15342557
chr22:51208837(-) A-I intron -    15342557
chr22:51208858(-) A-I intron -    15342557
chr22:51208859(-) A-I intron -    15342557
chr22:51208862(-) A-I intron -    15342557
chr22:51208863(-) A-I intron -    15342557
chr22:51208868(-) A-I intron -    15342557

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RABL2B
chr22:51206907-51206908(-) m6A 3'UTR//exon//intron       27773535
chr22:51206927-51206928(-) m6A 3'UTR//exon//intron       27773535
chr22:51207017-51207018(-) m6A 3'UTR//exon//intron       24981863//27773535
chr22:51207024-51207025(-) m6A 3'UTR//exon//intron       24981863//27773535
chr22:51207125-51207126(-) m6A 3'UTR//exon//intron       27773535
chr22:51207238-51207239(-) m6A 3'UTR//CDS//exon       27371828
chr22:51207257-51207258(-) m6A 3'UTR//CDS//exon       27371828
chr22:51207264-51207265(-) m6A 3'UTR//CDS//exon       27371828
chr22:51207976-51207977(-) m6A CDS//exon       27773535
chr22:51208009-51208010(-) m6A exon//intron       27773535
chr22:51208032-51208033(-) m6A exon//intron       27773535
chr22:51208102-51208103(-) m6A exon//intron       27773535
chr22:51208135-51208136(-) m6A exon//intron       27773535
chr22:51211015-51211016(-) m6A 3'UTR//intron       -
chr22:51211232-51211233(-) m6A 3'UTR//intron       -
chr22:51211238-51211239(-) m6A 3'UTR//intron       -
chr22:51211243-51211244(-) m6A 3'UTR//intron       -
chr22:51211258-51211259(-) m6A 3'UTR//intron       -
chr22:51211265-51211266(-) m6A 3'UTR//intron       -
chr22:51211318-51211319(-) m6A 3'UTR//intron       -
chr22:51211344-51211345(-) m6A 3'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RABL2B
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: RABL2B

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...