Basic Information:

  VIRBase ID:  

VHID00143943

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          CIB2:  NR_125435     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	CIB2
miRBase Accession/Entrez ID	MIMAT0015280	10518
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DFNB48//KIP2//USH1J

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CIB2	chr15:78400438(-) A-I      intronic chr15:78400397(-) A-I      intronic chr15:78400431(-) A-I      intronic chr15:78400430(-) A-I      intronic chr15:78400437(-) A-I      intronic chr15:78404706(-) A-I      intronic chr15:78406144(-) A-I      intronic chr15:78405885(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CIB2	chr15:78397433-78397434(-) m6A 3'UTR       24981863 chr15:78397649-78397650(-) m6A 3'UTR//CDS       25456834 chr15:78397856-78397857(-) m6A 3'UTR//intron       25456834 chr15:78397891-78397892(-) m6A 3'UTR//intron       25456834 chr15:78398110-78398111(-) m6A 3'UTR//CDS//intron       25456834//24981863 chr15:78401594-78401595(-) Y 3'UTR//CDS       26075521 chr15:78423541-78423542(-) m6A 5'UTR//CDS       27773536 chr15:78423549-78423550(-) m6A 5'UTR//CDS       27773536 chr15:78423729-78423730(-) m6A 5'UTR       27773536 chr15:78423825-78423826(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CIB2	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: CIB2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg