Basic Information:

  VIRBase ID:  

VHID00143756

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          SETD1A:  NM_014712     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	SETD1A
miRBase Accession/Entrez ID	MIMAT0015280	9739
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EPEDD//KMT2F//NEDSID//Set1//Set1A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SETD1A	chr16:30973608(+) A-I      intronic chr16:30974168(+) A-I      intronic chr16:30975134(+) A-I      intronic chr16:30986881(+) A-I      intronic chr16:30986917(+) A-I      intronic chr16:30987466(+) A-I      intronic chr16:30973503(+) A-I      intronic chr16:30987017(+) A-I      intronic chr16:30986524(+) A-I      intronic chr16:30993187(+) A-I      intronic chr16:30986209(+) A-I      intronic chr16:30993165(+) A-I      intronic chr16:30993161(+) A-I      intronic chr16:30986137(+) A-I      intronic chr16:30979565(+) A-I      intronic chr16:30973575(+) A-I      intronic chr16:30986253(+) A-I      intronic chr16:30975325(+) A-I      intronic chr16:30986877(+) A-I      intronic chr16:30974034(+) A-I      intronic chr16:30973519(+) A-I      intronic chr16:30987631(+) A-I      intronic chr16:30974151(+) A-I      intronic chr16:30992957(+) A-I      intronic chr16:30993112(+) A-I      intronic chr16:30987473(+) A-I      intronic chr16:30986972(+) A-I      intronic chr16:30987513(+) A-I      intronic chr16:30986932(+) A-I      intronic chr16:30975126(+) A-I      intronic chr16:30973647(+) A-I      intronic chr16:30974021(+) A-I      intronic chr16:30973591(+) A-I      intronic chr16:30986869(+) A-I      intronic chr16:30974082(+) A-I      intronic chr16:30993772(+) A-I      intronic chr16:30993734(+) A-I      intronic chr16:30986121(+) A-I      intronic chr16:30986239(+) A-I      intronic chr16:30993572(+) A-I      intronic chr16:30974092(+) A-I      intronic chr16:30986072(+) A-I      intronic chr16:30989341(+) A-I      intronic chr16:30983792(+) A-I      intronic chr16:30986404(+) A-I      intronic chr16:30988320(+) A-I      intronic chr16:30983786(+) A-I      intronic chr16:30983780(+) A-I      intronic chr16:30988409(+) A-I      intronic chr16:30988386(+) A-I      intronic chr16:30973515(+) A-I      intronic chr16:30993121(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SETD1A	chr16:30993165(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SETD1A	chr16:30968665-30968666(+) m6A 5'UTR       24284625//25456834//24981863//22575960//22608085 chr16:30968706-30968707(+) m6A 5'UTR       24284625//25456834//24981863//22575960//22608085 chr16:30968851-30968852(+) m6A 5'UTR       24284625//25456834//24981863//22575960//22608085 chr16:30969044-30969045(+) m6A 5'UTR       24284625//25456834//27773536//22608085 chr16:30975511-30975512(+) m6A CDS       24284625 chr16:30975585-30975586(+) m6A CDS       24284625//24209618//24981863 chr16:30975625-30975626(+) m6A CDS       24284625//24209618//25456834//24981863 chr16:30975970-30975971(+) m6A CDS       24284625//24209618//25456834//24981863 chr16:30976156-30976157(+) m6A CDS       24284625//24209618//24981863 chr16:30976235-30976236(+) m6A CDS       24284625//24209618//24981863//22575960 chr16:30976333-30976334(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30976379-30976380(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30976426-30976427(+) m1A CDS       26863196 chr16:30976434-30976435(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30976485-30976486(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30976609-30976610(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30976772-30976773(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30976777-30976778(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30977112-30977113(+) m6A CDS       24284625//24209618//25456834//24981863 chr16:30977183-30977184(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30977201-30977202(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30977251-30977252(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30977551-30977552(+) m6A CDS       24284625 chr16:30977627-30977628(+) m6A CDS       24284625//24209618//24981863//22575960 chr16:30977674-30977675(+) Cm CDS       - chr16:30978292-30978293(+) m6A CDS       24284625//24209618//24981863 chr16:30980632-30980633(+) m6A CDS       24284625//24209618//24981863 chr16:30980669-30980670(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30980705-30980706(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960 chr16:30980739-30980740(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960 chr16:30980994-30980995(+) m6A CDS       25456834//24981863//27773535 chr16:30982776-30982777(+) m6A CDS       24981863 chr16:30983011-30983012(+) m6A CDS       24284625//24209618 chr16:30990511-30990512(+) m6A CDS       24284625//24209618//25456834 chr16:30990605-30990606(+) m6A CDS       24284625//25456834//24981863 chr16:30990722-30990723(+) m6A CDS       24284625//25456834//24981863 chr16:30990744-30990745(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30990851-30990852(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30990861-30990862(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30990933-30990934(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30990950-30990951(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:30991372-30991373(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:30991401-30991402(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:30991413-30991414(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:30991422-30991423(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:30991466-30991467(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:30991867-30991868(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr16:30991919-30991920(+) m6A CDS       24284625//25456834//24981863//22575960 chr16:30991970-30991971(+) m6A CDS       24284625 chr16:30992066-30992067(+) m6A CDS       24284625 chr16:30992138-30992139(+) m6A CDS       24284625 chr16:30992154-30992155(+) m6A CDS       24284625 chr16:30992446-30992447(+) m6A CDS       24284625 chr16:30992490-30992491(+) m6A CDS       24284625 chr16:30995339-30995340(+) m6A CDS       24981863 chr16:30995913-30995914(+) m6A 3'UTR       - chr16:30995937-30995938(+) m6A 3'UTR       - chr16:30995969-30995970(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SETD1A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: SETD1A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg