Detail Information

Basic Information:


  VIRBase ID:  

VHID00143599

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           CLDN6:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p CLDN6
miRBase
Accession/Entrez ID		 MIMAT0015280 9074
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLDN6
chr16:3069574(-) A-I      intronic
chr16:3068680(-) A-I      intronic
chr16:3069894(-) A-I      intronic
chr16:3069591(-) A-I      intronic
chr16:3069069(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLDN6
chr16:3066617(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLDN6
chr16:3064815-3064816(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3064884-3064885(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3064900-3064901(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3064922-3064923(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3064979-3064980(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3065040-3065041(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3065081-3065082(-) m6A 3'UTR       25456834//24981863//27773535
chr16:3065193-3065194(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:3065216-3065217(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:3065585-3065586(-) m6A CDS//intron       25456834//24981863
chr16:3065795-3065796(-) m6A CDS//intron       25456834
chr16:3068209-3068210(-) m6A 5'UTR       25456834//24981863

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: CLDN6

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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