Basic Information:

  VIRBase ID:  

VHID00143397

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          XRCC3:  NM_005432     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	XRCC3
miRBase Accession/Entrez ID	MIMAT0015280	7517
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMM6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	XRCC3	chr14:104181293(-) A-I      intronic chr14:104181160(-) A-I      intronic chr14:104168053(-) A-I      intronic chr14:104180849(-) A-I      intronic chr14:104180898(-) A-I      intronic chr14:104181084(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	XRCC3	chr14:104180625(-) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	XRCC3	chr14:104163988-104163989(-) m6A 3'UTR//exon       - chr14:104164133-104164134(-) m6A 3'UTR//exon       - chr14:104164375-104164376(-) m6A 3'UTR//exon       - chr14:104164479-104164480(-) m6A 3'UTR//exon       - chr14:104164560-104164561(-) m6A 3'UTR//exon       - chr14:104164917-104164918(-) m6A 3'UTR//exon       25456834//24981863//27773536 chr14:104164969-104164970(-) m6A 3'UTR//exon       25456834//24981863//27773536//22608085 chr14:104165025-104165026(-) m6A 3'UTR//exon       25456834//24981863//27773536//22575960//22608085 chr14:104165030-104165031(-) Y 3'UTR//exon       26075521 chr14:104165148-104165149(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr14:104165157-104165158(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr14:104165235-104165236(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536 chr14:104165290-104165291(-) m6A CDS//exon       24284625//25456834//27371828//27773536 chr14:104168565-104168566(-) m6A exon//intron       27773536 chr14:104168589-104168590(-) m6A exon//intron       27773536 chr14:104168640-104168641(-) m6A exon//intron       27773536 chr14:104168834-104168835(-) m6A exon//intron       27773536 chr14:104171338-104171339(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr14:104171530-104171531(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr14:104171548-104171549(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr14:104171679-104171680(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr14:104172050-104172051(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr14:104172066-104172067(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr14:104172220-104172221(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773536//22608085 chr14:104172291-104172292(-) m6A 3'UTR//intron       25456834//27773536 chr14:104172641-104172642(-) m6A 3'UTR//intron       24284625 chr14:104173405-104173406(-) m6A CDS//exon//intron       24284625//27773536 chr14:104173930-104173931(-) m6A exon//intron       24284625 chr14:104173991-104173992(-) m6A exon//intron       24284625 chr14:104174027-104174028(-) m6A exon//intron       - chr14:104174185-104174186(-) m6A exon//intron       27773536 chr14:104174311-104174312(-) m6A exon//intron       27773536 chr14:104174611-104174612(-) m6A exon//intron       24284625//27773536 chr14:104174625-104174626(-) m6A exon//intron       24284625//27773536 chr14:104174636-104174637(-) m6A exon//intron       24284625//27773536 chr14:104174650-104174651(-) m6A exon//intron       27773536 chr14:104174760-104174761(-) m6A exon//intron       25456834 chr14:104174773-104174774(-) m6A exon//intron       25456834 chr14:104177404-104177405(-) m6A CDS//exon//intron       22575960 chr14:104177831-104177832(-) m6A 5'UTR//exon//intron       24284625//27371828 chr14:104177872-104177873(-) m6A 5'UTR//exon//intron       24284625//24981863//27773535//27371828 chr14:104177890-104177891(-) m6A 5'UTR//exon//intron       24284625//24981863//27773535//27371828 chr14:104177926-104177927(-) m6A 5'UTR//intron       24284625//24981863//27371828 chr14:104178223-104178224(-) m6A 5'UTR//intron       25456834 chr14:104178268-104178269(-) m6A 5'UTR//intron       25456834//22575960 chr14:104178281-104178282(-) m6A 5'UTR//intron       25456834//22575960 chr14:104178353-104178354(-) m6A 5'UTR//intron       25456834 chr14:104178423-104178424(-) m6A 5'UTR//intron       24209618//25456834 chr14:104179228-104179229(-) m6A 5'UTR//intron       24209618//25456834 chr14:104179283-104179284(-) m6A 5'UTR//intron       24284625//24209618//24981863 chr14:104180494-104180495(-) m6A 5'UTR//intron       - chr14:104181770-104181771(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	XRCC3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: XRCC3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg