Basic Information:

  VIRBase ID:  

VHID00143376

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          VAV2:  NM_003371     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	VAV2
miRBase Accession/Entrez ID	MIMAT0015280	7410
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	VAV-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VAV2	chr9:136765061(-) A-I      intronic chr9:136806467(-) A-I      intronic chr9:136806899(-) A-I      intronic chr9:136806902(-) A-I      intronic chr9:136806952(-) A-I      intronic chr9:136806972(-) A-I      intronic chr9:136812610(-) A-I      intronic chr9:136812654(-) A-I      intronic chr9:136812734(-) A-I      intronic chr9:136812984(-) A-I      intronic chr9:136812996(-) A-I      intronic chr9:136813008(-) A-I      intronic chr9:136813089(-) A-I      intronic chr9:136813107(-) A-I      intronic chr9:136813126(-) A-I      intronic chr9:136813131(-) A-I      intronic chr9:136813140(-) A-I      intronic chr9:136813150(-) A-I      intronic chr9:136829225(-) A-I      intronic chr9:136764434(-) A-I      intronic chr9:136764686(-) A-I      intronic chr9:136764706(-) A-I      intronic chr9:136765043(-) A-I      intronic chr9:136849867(-) A-I      intronic chr9:136765096(-) A-I      intronic chr9:136829237(-) A-I      intronic chr9:136766197(-) A-I      intronic chr9:136806362(-) A-I      intronic chr9:136829361(-) A-I      intronic chr9:136766060(-) A-I      intronic chr9:136766086(-) A-I      intronic chr9:136766091(-) A-I      intronic chr9:136766100(-) A-I      intronic chr9:136829368(-) A-I      intronic chr9:136685543(-) A-I      intronic chr9:136685557(-) A-I      intronic chr9:136849156(-) A-I      intronic chr9:136849226(-) A-I      intronic chr9:136806364(-) A-I      intronic chr9:136849892(-) A-I      intronic chr9:136849258(-) A-I      intronic chr9:136849270(-) A-I      intronic chr9:136806446(-) A-I      intronic chr9:136829356(-) A-I      intronic chr9:136849940(-) A-I      intronic chr9:136849947(-) A-I      intronic chr9:136849967(-) A-I      intronic chr9:136849984(-) A-I      intronic chr9:136850439(-) A-I      intronic chr9:136850571(-) A-I      intronic chr9:136850572(-) A-I      intronic chr9:136849272(-) A-I      intronic chr9:136694798(-) A-I      intronic chr9:136850579(-) A-I      intronic chr9:136850581(-) A-I      intronic chr9:136850631(-) A-I      intronic chr9:136850677(-) A-I      intronic chr9:136850685(-) A-I      intronic chr9:136696476(-) A-I      intronic chr9:136704675(-) A-I      intronic chr9:136704736(-) A-I      intronic chr9:136681755(-) A-I      intronic chr9:136681768(-) A-I      intronic chr9:136683243(-) A-I      intronic chr9:136683297(-) A-I      intronic chr9:136683319(-) A-I      intronic chr9:136683376(-) A-I      intronic chr9:136684023(-) A-I      intronic chr9:136684083(-) A-I      intronic chr9:136684094(-) A-I      intronic chr9:136684113(-) A-I      intronic chr9:136684139(-) A-I      intronic chr9:136684373(-) A-I      intronic chr9:136684385(-) A-I      intronic chr9:136684399(-) A-I      intronic chr9:136684459(-) A-I      intronic chr9:136684463(-) A-I      intronic chr9:136684502(-) A-I      intronic chr9:136704746(-) A-I      intronic chr9:136684507(-) A-I      intronic chr9:136685550(-) A-I      intronic chr9:136685584(-) A-I      intronic chr9:136685590(-) A-I      intronic chr9:136694786(-) A-I      intronic chr9:136813106(-) A-I      intronic chr9:136696385(-) A-I      intronic chr9:136696496(-) A-I      intronic chr9:136697783(-) A-I      intronic chr9:136704635(-) A-I      intronic chr9:136704658(-) A-I      intronic chr9:136704748(-) A-I      intronic chr9:136704749(-) A-I      intronic chr9:136734041(-) A-I      intronic chr9:136734257(-) A-I      intronic chr9:136734610(-) A-I      intronic chr9:136763467(-) A-I      intronic chr9:136763494(-) A-I      intronic chr9:136763519(-) A-I      intronic chr9:136763538(-) A-I      intronic chr9:136763592(-) A-I      intronic chr9:136763607(-) A-I      intronic chr9:136763996(-) A-I      intronic chr9:136764082(-) A-I      intronic chr9:136764148(-) A-I      intronic chr9:136764177(-) A-I      intronic chr9:136764210(-) A-I      intronic chr9:136764216(-) A-I      intronic chr9:136829358(-) A-I      intronic chr9:136766104(-) A-I      intronic chr9:136766124(-) A-I      intronic chr9:136734216(-) A-I      intronic chr9:136696475(-) A-I      intronic chr9:136765299(-) A-I      intronic chr9:136813017(-) A-I      intronic chr9:136849973(-) A-I      intronic chr9:136684508(-) A-I      intronic chr9:136734301(-) A-I      intronic chr9:136849268(-) A-I      intronic chr9:136765315(-) A-I      intronic chr9:136849231(-) A-I      intronic chr9:136683257(-) A-I      intronic chr9:136849996(-) A-I      intronic chr9:136806325(-) A-I      intronic chr9:136684071(-) A-I      intronic chr9:136766059(-) A-I      intronic chr9:136850568(-) A-I      intronic chr9:136763545(-) A-I      intronic chr9:136684005(-) A-I      intronic chr9:136849678(-) A-I      intronic chr9:136764422(-) A-I      intronic chr9:136696506(-) A-I      intronic chr9:136849673(-) A-I      intronic chr9:136763604(-) A-I      intronic chr9:136813009(-) A-I      intronic chr9:136850605(-) A-I      intronic chr9:136765307(-) A-I      intronic chr9:136734251(-) A-I      intronic chr9:136764637(-) A-I      intronic chr9:136765177(-) A-I      intronic chr9:136806304(-) A-I      intronic chr9:136849492(-) A-I      intronic chr9:136806863(-) A-I      intronic chr9:136849190(-) A-I      intronic chr9:136849613(-) A-I      intronic chr9:136806285(-) A-I      intronic chr9:136812605(-) A-I      intronic chr9:136849127(-) A-I      intronic chr9:136812659(-) A-I      intronic chr9:136849491(-) A-I      intronic chr9:136849232(-) A-I      intronic chr9:136849864(-) A-I      intronic chr9:136850024(-) A-I      intronic chr9:136849918(-) A-I      intronic chr9:136734258(-) A-I      intronic chr9:136734271(-) A-I      intronic chr9:136849970(-) A-I      intronic chr9:136764740(-) A-I      intronic chr9:136764453(-) A-I      intronic chr9:136813060(-) A-I      intronic chr9:136749228(-) A-I      intronic chr9:136696458(-) A-I      intronic chr9:136849238(-) A-I      intronic chr9:136850597(-) A-I      intronic chr9:136764702(-) A-I      intronic chr9:136765275(-) A-I      intronic chr9:136813050(-) A-I      intronic chr9:136770902(-) A-I      intronic chr9:136850480(-) A-I      intronic chr9:136789589(-) A-I      intronic chr9:136764636(-) A-I      intronic chr9:136813116(-) A-I      intronic chr9:136806358(-) A-I      intronic chr9:136849191(-) A-I      intronic chr9:136765021(-) A-I      intronic chr9:136812974(-) A-I      intronic chr9:136734382(-) A-I      intronic chr9:136734556(-) A-I      intronic chr9:136849857(-) A-I      intronic chr9:136813180(-) A-I      intronic chr9:136697908(-) A-I      intronic chr9:136813159(-) A-I      intronic chr9:136849265(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VAV2	chr9:136849231(-) A-G intron -    22484847 chr9:136849232(-) A-G intron -    22484847 chr9:136850568(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VAV2	chr9:136627878-136627879(-) m6A 3'UTR       25456834 chr9:136628531-136628532(-) m6A 3'UTR       27773536 chr9:136628577-136628578(-) m6A 3'UTR       27371828//27773536 chr9:136628680-136628681(-) m6A 3'UTR       25456834//27371828//27773536 chr9:136628699-136628700(-) m6A 3'UTR       24284625//25456834//27371828//27773536 chr9:136628747-136628748(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536 chr9:136628779-136628780(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr9:136628791-136628792(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr9:136628822-136628823(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr9:136628960-136628961(-) m6A 3'UTR       24981863//27773535 chr9:136629024-136629025(-) m6A 3'UTR       24981863//27773535 chr9:136629030-136629031(-) m6A 3'UTR       24981863//27773535 chr9:136629163-136629164(-) m6A 3'UTR       24981863 chr9:136629168-136629169(-) m6A 3'UTR       24981863 chr9:136633574-136633575(-) m6A CDS       24981863 chr9:136633597-136633598(-) m6A CDS       - chr9:136635567-136635568(-) m6A CDS       27773535 chr9:136637126-136637127(-) m6A CDS       27773535 chr9:136640111-136640112(-) m6A CDS       - chr9:136649472-136649473(-) m6A CDS       27773535 chr9:136649522-136649523(-) m6A CDS       27773535 chr9:136649534-136649535(-) m6A CDS       27773535 chr9:136650943-136650944(-) m6A CDS       27773535 chr9:136656948-136656949(-) m6A CDS       27773535 chr9:136656956-136656957(-) m6A CDS       27773535 chr9:136662883-136662884(-) m6A CDS       - chr9:136672407-136672408(-) m6A CDS       27773535//27371828//22575960 chr9:136674171-136674172(-) m6A CDS       24981863//27773535//27371828//22575960 chr9:136674202-136674203(-) m6A CDS       24209618//24981863//27773535//27371828//22575960 chr9:136674228-136674229(-) m6A CDS       24209618//24981863//27773535//27371828//22575960 chr9:136677266-136677267(-) m6A CDS       24209618//24981863//27773535//27371828//22575960 chr9:136677317-136677318(-) m6A CDS       24209618//27773535//22575960 chr9:136699442-136699443(-) m6A CDS       27773535//22575960 chr9:136857224-136857225(-) m6A CDS//exon       27773536 chr9:136857524-136857525(-) m6A 5'UTR       25456834//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VAV2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: VAV2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg