Basic Information:

  VIRBase ID:  

VHID00143285

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          TBX6:  NM_004608     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	TBX6
miRBase Accession/Entrez ID	MIMAT0015280	6911
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SCDO5

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TBX6	chr16:30097512-30097513(-) m6A 3'UTR       25456834 chr16:30097544-30097545(-) m6A 3'UTR       - chr16:30097557-30097558(-) m6A 3'UTR//CDS       - chr16:30098144-30098145(-) m6A CDS//intron       - chr16:30099245-30099246(-) m6A 3'UTR//intron       - chr16:30099285-30099286(-) m6A 3'UTR//intron       - chr16:30100020-30100021(-) m6A CDS       - chr16:30100051-30100052(-) m6A CDS       - chr16:30100276-30100277(-) m6A CDS       - chr16:30102296-30102297(-) m6A CDS       - chr16:30102306-30102307(-) m6A CDS       - chr16:30102521-30102522(-) m6A 5'UTR       - chr16:30102538-30102539(-) m6A 5'UTR       - chr16:30103109-30103110(-) m6A 5'UTR//intron       25456834//27371828 chr16:30103124-30103125(-) m6A 5'UTR//intron       25456834//27371828 chr16:30103134-30103135(-) m6A 5'UTR//intron       25456834//27371828 chr16:30103178-30103179(-) m6A 5'UTR//intron       - chr16:30103195-30103196(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TBX6	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: TBX6

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg