Detail Information

Basic Information:


  VIRBase ID:  

VHID00143272

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           SYP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p SYP
miRBase
Accession/Entrez ID		 MIMAT0015280 6855
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - MRX96//MRXSYP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SYP
chrX:49048838(-) A-I      intronic
chrX:49046956(-) A-I      intronic
chrX:49046953(-) A-I      intronic
chrX:49046225(-) A-I      intronic
chrX:49046178(-) A-I      intronic
chrX:49046205(-) A-I      intronic
chrX:49046175(-) A-I      intronic
chrX:49046192(-) A-I      intronic
chrX:49051283(-) A-I      intronic
chrX:49046765(-) A-I      intronic
chrX:49046247(-) A-I      intronic
chrX:49053567(-) A-I      intronic
chrX:49046883(-) A-I      intronic
chrX:49046187(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SYP
chrX:49044282-49044283(-) m6A 3'UTR       24981863//27773535
chrX:49044310-49044311(-) m6A 3'UTR       24981863//27773535
chrX:49044330-49044331(-) m6A 3'UTR       24981863//27773535
chrX:49044352-49044353(-) m6A 3'UTR       24981863//27773535
chrX:49044370-49044371(-) m6A 3'UTR       24981863//27773535
chrX:49044600-49044601(-) m6A 3'UTR       24209618//27773535
chrX:49044774-49044775(-) m6A 3'UTR       24981863//27773535
chrX:49044888-49044889(-) m6A 3'UTR       24981863//27773535
chrX:49044946-49044947(-) m6A 3'UTR       24209618//24981863//27773535
chrX:49044968-49044969(-) m6A 3'UTR       24209618//24981863//27773535
chrX:49044979-49044980(-) m6A 3'UTR       24209618//24981863//27773535
chrX:49045160-49045161(-) m6A 3'UTR       24981863
chrX:49045223-49045224(-) m6A 3'UTR       24981863
chrX:49045233-49045234(-) m6A 3'UTR       24981863
chrX:49047571-49047572(-) m6A 3'UTR//intron       25456834
chrX:49047671-49047672(-) m6A 3'UTR//intron       25456834//27773535
chrX:49047715-49047716(-) m6A 3'UTR//intron       25456834//27773535
chrX:49047737-49047738(-) m6A 3'UTR//intron       25456834//27773535
chrX:49047770-49047771(-) m6A 3'UTR//intron       27773535
chrX:49047825-49047826(-) m6A 3'UTR//intron       27773535
chrX:49054477-49054478(-) m6A exon//intron       27773535
chrX:49054487-49054488(-) m6A exon//intron       27773535
chrX:49054501-49054502(-) m6A exon//intron       27773535
chrX:49054511-49054512(-) m6A exon//intron       27773535
chrX:49054550-49054551(-) m6A exon//intron       27773535
chrX:49054559-49054560(-) m6A exon//intron       27773535
chrX:49054580-49054581(-) m6A exon//intron       27773535
chrX:49054586-49054587(-) m6A exon//intron       27773535
chrX:49054604-49054605(-) m6A exon//intron       27773535
chrX:49054616-49054617(-) m6A exon//intron       27773535
chrX:49054622-49054623(-) m6A exon//intron       27773535
chrX:49054635-49054636(-) m6A exon//intron       27773535
chrX:49054643-49054644(-) m6A exon//intron       27773535
chrX:49054653-49054654(-) m6A exon//intron       27773535
chrX:49054694-49054695(-) m6A exon//intron       27773535
chrX:49054704-49054705(-) m6A exon//intron       27773535
chrX:49054719-49054720(-) m6A exon//intron       27773535
chrX:49054743-49054744(-) m6A exon//intron       27773535
chrX:49054749-49054750(-) m6A exon//intron       27773535
chrX:49054757-49054758(-) m6A exon//intron       27773535
chrX:49054765-49054766(-) m6A exon//intron       27773535
chrX:49054773-49054774(-) m6A exon//intron       27773535
chrX:49054779-49054780(-) m6A exon//intron       27773535
chrX:49054787-49054788(-) m6A exon//intron       27773535
chrX:49054792-49054793(-) m6A exon//intron       27773535
chrX:49054804-49054805(-) m6A exon//intron       25456834//27773535
chrX:49054815-49054816(-) m6A exon//intron       25456834//27773535
chrX:49054826-49054827(-) m6A exon//intron       25456834//27773535
chrX:49054851-49054852(-) m6A exon//intron       25456834//27773535
chrX:49054870-49054871(-) m6A exon//intron       25456834//27773535
chrX:49054886-49054887(-) m6A exon//intron       25456834//27773535
chrX:49054906-49054907(-) m6A exon//intron       25456834//27773535
chrX:49054932-49054933(-) m6A exon//intron       27773535
chrX:49054948-49054949(-) m6A exon//intron       27773535
chrX:49054957-49054958(-) m6A exon//intron       27773535
chrX:49054972-49054973(-) m6A exon//intron       27773535
chrX:49054982-49054983(-) m6A exon//intron       27773535
chrX:49054998-49054999(-) m6A exon//intron       27773535
chrX:49055055-49055056(-) m6A exon//intron       27773535
chrX:49055071-49055072(-) m6A exon//intron       27773535
chrX:49055099-49055100(-) m6A exon//intron       27773535
chrX:49055107-49055108(-) m6A exon//intron       27773535
chrX:49056628-49056629(-) m6A CDS//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SYP
Chromatin K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: SYP

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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