Basic Information:

  VIRBase ID:  

VHID00143121

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          RTKN:  NM_001015056     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	RTKN
miRBase Accession/Entrez ID	MIMAT0015280	6242
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RTKN	chr2:74660823(-) A-I      intronic chr2:74660816(-) A-I      intronic chr2:74660114(-) A-I      intronic chr2:74666165(-) A-I      intronic chr2:74661822(-) A-I      intronic chr2:74666234(-) A-I      intronic chr2:74661747(-) A-I      intronic chr2:74661746(-) A-I      intronic chr2:74660189(-) A-I      intronic chr2:74666236(-) A-I      intronic chr2:74666238(-) A-I      intronic chr2:74660817(-) A-I      intronic chr2:74660181(-) A-I      intronic chr2:74660028(-) A-I      intronic chr2:74660854(-) A-I      intronic chr2:74660126(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RTKN	chr2:74660126(-) A-G intron -    22484847 chr2:74660181(-) A-G intron -    22484847 chr2:74660854(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RTKN	chr2:74652987-74652988(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr2:74653059-74653060(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653072-74653073(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653126-74653127(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653132-74653133(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653149-74653150(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653159-74653160(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653182-74653183(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653248-74653249(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr2:74653425-74653426(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653481-74653482(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653509-74653510(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653516-74653517(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653539-74653540(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653544-74653545(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr2:74653598-74653599(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27773536 chr2:74653629-74653630(-) m6A CDS//exon       24284625//27773535//27773536 chr2:74653664-74653665(-) m6A CDS//exon       24284625 chr2:74654899-74654900(-) m6A exon//intron       27773535 chr2:74654997-74654998(-) m6A exon//intron       27773535 chr2:74655434-74655435(-) m6A CDS       27773535 chr2:74655467-74655468(-) m6A CDS       27773535 chr2:74657823-74657824(-) m6A exon//intron       27773536 chr2:74657863-74657864(-) m6A exon//intron       27773536 chr2:74659767-74659768(-) m6A 5'UTR//CDS//exon//intron       24209618//27773535//27773536 chr2:74666720-74666721(-) m6A CDS//exon//intron       24284625//24209618//25456834//27773535//27773536 chr2:74666741-74666742(-) m6A CDS//exon//intron       24284625//24209618//25456834//27773535//27773536 chr2:74666817-74666818(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773535//27773536 chr2:74666825-74666826(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773535//27773536 chr2:74666840-74666841(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773535//27773536 chr2:74666849-74666850(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773535//27773536 chr2:74667023-74667024(-) m6A 5'UTR//exon//intron       24284625//27773536 chr2:74667070-74667071(-) m6A 5'UTR//exon//intron       27773536 chr2:74667075-74667076(-) m6A 5'UTR//exon//intron       27773536 chr2:74667095-74667096(-) m6A 5'UTR//exon//intron       27773536 chr2:74667706-74667707(-) m6A 5'UTR//exon//intron       25456834 chr2:74668929-74668930(-) m6A CDS//exon//intron       25456834//27773536 chr2:74669019-74669020(-) m6A 5'UTR//exon//intron       25456834//27773536 chr2:74669041-74669042(-) m6A exon//intron       25456834//27773536 chr2:74669162-74669163(-) m6A exon//intron       25456834//27773536 chr2:74669423-74669424(-) m6A exon       25456834//27773535//22608085 chr2:74669469-74669470(-) m6A exon       25456834//27773535//22608085 chr2:74669478-74669479(-) m6A exon       25456834//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RTKN	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: RTKN

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg