Basic Information:

  VIRBase ID:  

VHID00143073

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          RAD23A:  NR_072976     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	RAD23A
miRBase Accession/Entrez ID	MIMAT0015280	5886
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HHR23A//HR23A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAD23A	chr19:13063934(+) A-I      3'UTR chr19:13063132(+) A-I      intronic chr19:13061757(+) A-I      intronic chr19:13061790(+) A-I      intronic chr19:13061799(+) A-I      intronic chr19:13061677(+) A-I      intronic chr19:13061682(+) A-I      intronic chr19:13061716(+) A-I      intronic chr19:13061752(+) A-I      intronic chr19:13061718(+) A-I      intronic chr19:13061722(+) A-I      intronic chr19:13063147(+) A-I      intronic chr19:13063158(+) A-I      intronic chr19:13063163(+) A-I      intronic chr19:13063131(+) A-I      intronic chr19:13061700(+) A-I      intronic chr19:13061736(+) A-I      intronic chr19:13061647(+) A-I      intronic chr19:13061397(+) A-I      intronic chr19:13061293(+) A-I      intronic chr19:13061691(+) A-I      intronic chr19:13061391(+) A-I      intronic chr19:13061771(+) A-I      intronic chr19:13061780(+) A-I      intronic chr19:13062920(+) A-I      intronic chr19:13062922(+) A-I      intronic chr19:13062934(+) A-I      intronic chr19:13063189(+) A-I      intronic chr19:13063203(+) A-I      intronic chr19:13063206(+) A-I      intronic chr19:13061694(+) A-I      intronic chr19:13061824(+) A-I      intronic chr19:13061476(+) A-I      intronic chr19:13061803(+) A-I      intronic chr19:13061727(+) A-I      intronic chr19:13061368(+) A-I      intronic chr19:13061400(+) A-I      intronic chr19:13061668(+) A-I      intronic chr19:13062903(+) A-I      intronic chr19:13061238(+) A-I      intronic chr19:13061813(+) A-I      intronic chr19:13061843(+) A-I      intronic chr19:13061298(+) A-I      intronic chr19:13061703(+) A-I      intronic chr19:13061475(+) A-I      intronic chr19:13061624(+) A-I      intronic chr19:13062029(+) A-I      intronic chr19:13062877(+) A-I      intronic chr19:13061345(+) A-I      intronic chr19:13061486(+) A-I      intronic chr19:13062895(+) A-I      intronic chr19:13061275(+) A-I      intronic chr19:13061810(+) A-I      intronic chr19:13061414(+) A-I      intronic chr19:13061713(+) A-I      intronic chr19:13061451(+) A-I      intronic chr19:13061355(+) A-I      intronic chr19:13061739(+) A-I      intronic chr19:13061784(+) A-I      intronic chr19:13061402(+) A-I      intronic chr19:13061477(+) A-I      intronic chr19:13061283(+) A-I      intronic chr19:13061485(+) A-I      intronic chr19:13061838(+) A-I      intronic chr19:13061671(+) A-I      intronic chr19:13061262(+) A-I      intronic chr19:13061984(+) A-I      intronic chr19:13063280(+) A-I      intronic chr19:13061702(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RAD23A	chr19:13059907(+) A-I exon CDS    19478186 chr19:13061731(+) A-I intron -    22327324 chr19:13061817(+) A-I intron -    22327324 chr19:13061422(+) A-G intron -    22484847 chr19:13061451(+) A-G intron -    22484847 chr19:13061475(+) A-G intron -    22484847 chr19:13061476(+) A-G intron -    22484847 chr19:13061477(+) A-G intron -    22484847 chr19:13061485(+) A-G intron -    22484847 chr19:13061731(+) A-G intron -    22484847 chr19:13061747(+) A-G intron -    22484847 chr19:13061803(+) A-G intron -    22484847 chr19:13061810(+) A-G intron -    22484847 chr19:13061817(+) A-G intron -    22484847 chr19:13061838(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAD23A	chr19:13056801-13056802(+) m6A CDS//exon       22575960 chr19:13056828-13056829(+) Gm CDS//exon       - chr19:13058723-13058724(+) m6A CDS//exon       22575960 chr19:13058729-13058730(+) m6A CDS//exon       22575960 chr19:13058776-13058777(+) m6A CDS//exon       24284625//22575960 chr19:13058797-13058798(+) m6A CDS//exon       24284625//24981863//22575960 chr19:13059117-13059118(+) m6A CDS//exon       24284625//24981863//22575960 chr19:13059710-13059711(+) m6A exon//intron       24284625 chr19:13059873-13059874(+) m6A exon//intron       - chr19:13059878-13059879(+) m6A exon//intron       - chr19:13059883-13059884(+) m6A exon//intron       - chr19:13059920-13059921(+) m6A 3'UTR//CDS//exon//intron       22575960 chr19:13060097-13060098(+) m6A 3'UTR//CDS//exon       22575960 chr19:13060118-13060119(+) m6A 3'UTR//CDS//exon       22575960 chr19:13060136-13060137(+) m6A 3'UTR//CDS//exon       22575960 chr19:13060160-13060161(+) m6A 3'UTR//CDS//exon       22575960 chr19:13060205-13060206(+) m6A 3'UTR//CDS//exon       22575960 chr19:13060326-13060327(+) m6A exon//intron       22575960 chr19:13063458-13063459(+) m6A exon//intron       - chr19:13063566-13063567(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863//22575960 chr19:13063623-13063624(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863//22575960 chr19:13063816-13063817(+) m6A 3'UTR//CDS       24981863//27773535 chr19:13063846-13063847(+) m6A 3'UTR//CDS       24981863//27773535 chr19:13063990-13063991(+) m6A 3'UTR       24981863//27773535 chr19:13063998-13063999(+) m6A 3'UTR       24981863//27773535 chr19:13064053-13064054(+) m6A 3'UTR       25456834//24981863//27773535//27773536//22575960 chr19:13064108-13064109(+) m6A 3'UTR       25456834//27773536//22575960 chr19:13064202-13064203(+) m6A 3'UTR       22575960 chr19:13064212-13064213(+) m6A 3'UTR       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAD23A	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: RAD23A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg