Basic Information:

  VIRBase ID:  

VHID00143006

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          PPP5C:  NM_006247     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	PPP5C
miRBase Accession/Entrez ID	MIMAT0015280	5536
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PP5//PPP5//PPT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP5C	chr19:46888804(+) A-I      intronic chr19:46888798(+) A-I      intronic chr19:46888773(+) A-I      intronic chr19:46888754(+) A-I      intronic chr19:46888753(+) A-I      intronic chr19:46884879(+) A-I      intronic chr19:46884859(+) A-I      intronic chr19:46864593(+) A-I      intronic chr19:46875487(+) A-I      intronic chr19:46883417(+) A-I      intronic chr19:46883425(+) A-I      intronic chr19:46883446(+) A-I      intronic chr19:46883462(+) A-I      intronic chr19:46883315(+) A-I      intronic chr19:46864971(+) A-I      intronic chr19:46864974(+) A-I      intronic chr19:46882508(+) A-I      intronic chr19:46864516(+) A-I      intronic chr19:46864648(+) A-I      intronic chr19:46864987(+) A-I      intronic chr19:46865009(+) A-I      intronic chr19:46866138(+) A-I      intronic chr19:46866730(+) A-I      intronic chr19:46866787(+) A-I      intronic chr19:46866815(+) A-I      intronic chr19:46866885(+) A-I      intronic chr19:46867653(+) A-I      intronic chr19:46868405(+) A-I      intronic chr19:46868487(+) A-I      intronic chr19:46868502(+) A-I      intronic chr19:46868514(+) A-I      intronic chr19:46869620(+) A-I      intronic chr19:46869629(+) A-I      intronic chr19:46869651(+) A-I      intronic chr19:46869788(+) A-I      intronic chr19:46874164(+) A-I      intronic chr19:46874171(+) A-I      intronic chr19:46874186(+) A-I      intronic chr19:46874199(+) A-I      intronic chr19:46882410(+) A-I      intronic chr19:46882626(+) A-I      intronic chr19:46882645(+) A-I      intronic chr19:46883438(+) A-I      intronic chr19:46883450(+) A-I      intronic chr19:46883485(+) A-I      intronic chr19:46883489(+) A-I      intronic chr19:46883498(+) A-I      intronic chr19:46883505(+) A-I      intronic chr19:46883518(+) A-I      intronic chr19:46883526(+) A-I      intronic chr19:46883561(+) A-I      intronic chr19:46884847(+) A-I      intronic chr19:46884902(+) A-I      intronic chr19:46884962(+) A-I      intronic chr19:46884994(+) A-I      intronic chr19:46889158(+) A-I      intronic chr19:46884802(+) A-I      intronic chr19:46851671(+) A-I      intronic chr19:46852361(+) A-I      intronic chr19:46852496(+) A-I      intronic chr19:46852500(+) A-I      intronic chr19:46855920(+) A-I      intronic chr19:46855923(+) A-I      intronic chr19:46855930(+) A-I      intronic chr19:46856034(+) A-I      intronic chr19:46864466(+) A-I      intronic chr19:46866871(+) A-I      intronic chr19:46866831(+) A-I      intronic chr19:46882628(+) A-I      intronic chr19:46883306(+) A-I      intronic chr19:46872871(+) A-I      intronic chr19:46866960(+) A-I      intronic chr19:46883457(+) A-I      intronic chr19:46882561(+) A-I      intronic chr19:46882472(+) A-I      intronic chr19:46883497(+) A-I      intronic chr19:46884926(+) A-I      intronic chr19:46889102(+) A-I      intronic chr19:46889970(+) A-I      intronic chr19:46882220(+) A-I      intronic chr19:46882491(+) A-I      intronic chr19:46882390(+) A-I      intronic chr19:46883456(+) A-I      intronic chr19:46869844(+) A-I      intronic chr19:46882619(+) A-I      intronic chr19:46866780(+) A-I      intronic chr19:46883352(+) A-I      intronic chr19:46882197(+) A-I      intronic chr19:46872634(+) A-I      intronic chr19:46882258(+) A-I      intronic chr19:46883492(+) A-I      intronic chr19:46882707(+) A-I      intronic chr19:46884848(+) A-I      intronic chr19:46852381(+) A-I      intronic chr19:46883342(+) A-I      intronic chr19:46889996(+) A-I      intronic chr19:46884803(+) A-I      intronic chr19:46864972(+) A-I      intronic chr19:46888639(+) A-I      intronic chr19:46851700(+) A-I      intronic chr19:46883486(+) A-I      intronic chr19:46882719(+) A-I      intronic chr19:46883333(+) A-I      intronic chr19:46864749(+) A-I      intronic chr19:46884850(+) A-I      intronic chr19:46882274(+) A-I      intronic chr19:46883423(+) A-I      intronic chr19:46872774(+) A-I      intronic chr19:46867617(+) A-I      intronic chr19:46882404(+) A-I      intronic chr19:46852508(+) A-I      intronic chr19:46863782(+) A-I      intronic chr19:46882571(+) A-I      intronic chr19:46890128(+) A-I      intronic chr19:46884779(+) A-I      intronic chr19:46869745(+) A-I      intronic chr19:46872742(+) A-I      intronic chr19:46883376(+) A-I      intronic chr19:46863783(+) A-I      intronic chr19:46883307(+) A-I      intronic chr19:46890071(+) A-I      intronic chr19:46883312(+) A-I      intronic chr19:46882411(+) A-I      intronic chr19:46883427(+) A-I      intronic chr19:46883361(+) A-I      intronic chr19:46883338(+) A-I      intronic chr19:46884921(+) A-I      intronic chr19:46864775(+) A-I      intronic chr19:46868610(+) A-I      intronic chr19:46855940(+) A-I      intronic chr19:46867595(+) A-I      intronic chr19:46883416(+) A-I      intronic chr19:46882244(+) A-I      intronic chr19:46857795(+) A-I      intronic chr19:46852483(+) A-I      intronic chr19:46890069(+) A-I      intronic chr19:46883434(+) A-I      intronic chr19:46883424(+) A-I      intronic chr19:46883415(+) A-I      intronic chr19:46882415(+) A-I      intronic chr19:46889939(+) A-I      intronic chr19:46864901(+) A-I      intronic chr19:46888662(+) A-I      intronic chr19:46882215(+) A-I      intronic chr19:46882450(+) A-I      intronic chr19:46888637(+) A-I      intronic chr19:46882496(+) A-I      intronic chr19:46864795(+) A-I      intronic chr19:46866948(+) A-I      intronic chr19:46882666(+) A-I      intronic chr19:46882654(+) A-I      intronic chr19:46882655(+) A-I      intronic chr19:46864467(+) A-I      intronic chr19:46889931(+) A-I      intronic chr19:46851854(+) A-I      intronic chr19:46888645(+) A-I      intronic chr19:46864748(+) A-I      intronic chr19:46889104(+) A-I      intronic chr19:46852440(+) A-I      intronic chr19:46872683(+) A-I      intronic chr19:46860384(+) A-I      intronic chr19:46890035(+) A-I      intronic chr19:46883471(+) A-I      intronic chr19:46889928(+) A-I      intronic chr19:46884863(+) A-I      intronic chr19:46857961(+) A-I      intronic chr19:46890055(+) A-I      intronic chr19:46883418(+) A-I      intronic chr19:46872628(+) A-I      intronic chr19:46860385(+) A-I      intronic chr19:46883419(+) A-I      intronic chr19:46869732(+) A-I      intronic chr19:46890127(+) A-I      intronic chr19:46882692(+) A-I      intronic chr19:46888861(+) A-I      intronic chr19:46867618(+) A-I      intronic chr19:46883426(+) A-I      intronic chr19:46863943(+) A-I      intronic chr19:46866719(+) A-I      intronic chr19:46884885(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PPP5C	chr19:46883352(+) A-I intron -    21960545   //22327324 chr19:46883418(+) A-I intron -    22028664 chr19:46883419(+) A-I intron -    22028664 chr19:46883421(+) A-I intron -    22028664 chr19:46883423(+) A-I intron -    22028664 chr19:46883424(+) A-I intron -    22028664 chr19:46883426(+) A-I intron -    22028664 chr19:46883427(+) A-I intron -    22028664 chr19:46883456(+) A-I intron -    22028664 chr19:46883457(+) A-I intron -    22028664 chr19:46883471(+) A-I intron -    22028664 chr19:46883497(+) A-I intron -    22028664 chr19:46883502(+) A-I intron -    22028664 chr19:46855685(+) C-G intron -    22484847 chr19:46882997(+) A-G intron -    22484847 chr19:46866938(+) A-G intron -    22484847 chr19:46882166(+) A-G intron -    22484847 chr19:46882197(+) A-G intron -    22484847 chr19:46882215(+) A-G intron -    22484847 chr19:46882220(+) A-G intron -    22484847 chr19:46882244(+) A-G intron -    22484847 chr19:46882472(+) A-G intron -    22484847 chr19:46882476(+) A-G intron -    22484847 chr19:46882619(+) A-G intron -    22484847 chr19:46882655(+) A-G intron -    22484847 chr19:46882683(+) A-G intron -    22484847 chr19:46883306(+) A-G intron -    22484847 chr19:46883307(+) A-G intron -    22484847 chr19:46883338(+) A-G intron -    22484847 chr19:46883352(+) A-G intron -    22484847 chr19:46883415(+) A-G intron -    22484847 chr19:46883421(+) A-G intron -    22484847 chr19:46883424(+) A-G intron -    22484847 chr19:46883426(+) A-G intron -    22484847 chr19:46883430(+) A-G intron -    22484847 chr19:46883471(+) A-G intron -    22484847 chr19:46883492(+) A-G intron -    22484847 chr19:46883502(+) A-G intron -    22484847 chr19:46883527(+) A-G intron -    22484847 chr19:46884850(+) A-G intron -    22484847 chr19:46884863(+) A-G intron -    22484847 chr19:46884885(+) A-G intron -    22484847 chr19:46889102(+) A-G intron -    22484847 chr19:46889104(+) A-G intron -    22484847 chr19:46889939(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP5C	chr19:46850377-46850378(+) m6A 5'UTR//CDS       24284625//25456834//24981863//22608085 chr19:46850406-46850407(+) m6A 5'UTR//CDS       24284625//25456834//24981863//22608085 chr19:46850449-46850450(+) m6A 5'UTR//CDS       24284625//25456834//24981863 chr19:46857010-46857011(+) m6A 5'UTR//CDS       24284625//25456834//24981863 chr19:46857055-46857056(+) m6A 5'UTR//CDS       24981863//22575960 chr19:46857157-46857158(+) m6A 5'UTR//CDS       24981863//22575960 chr19:46857235-46857236(+) m6A CDS       24981863//22575960 chr19:46878984-46878985(+) m6A CDS//exon       24981863//22575960 chr19:46878993-46878994(+) m6A CDS//exon       24981863//22575960 chr19:46879731-46879732(+) m6A CDS//exon       24981863//22575960 chr19:46879796-46879797(+) m6A CDS//exon       24981863//22575960 chr19:46879806-46879807(+) m6A CDS//exon       24981863//22575960 chr19:46886718-46886719(+) m6A CDS//exon//intron       - chr19:46891885-46891886(+) m6A CDS//exon       - chr19:46891894-46891895(+) m6A CDS//exon       - chr19:46893802-46893803(+) m6A 3'UTR//exon//intron       - chr19:46893961-46893962(+) m6A 3'UTR//exon//intron       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP5C	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: PPP5C

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg