Detail Information

Basic Information:


  VIRBase ID:  

VHID00142953

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           PKD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p PKD1
miRBase
Accession/Entrez ID		 MIMAT0015280 5310
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - PBP//Pc-1//PC1//TRPP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PKD1
chr16:2179040(-) A-I      intronic
chr16:2179041(-) A-I      intronic
chr16:2179025(-) A-I      intronic
chr16:2146638(-) A-I      intronic
chr16:2145367(-) A-I      intronic
chr16:2145350(-) A-I      intronic
chr16:2145306(-) A-I      intronic
chr16:2146593(-) A-I      intronic
chr16:2145315(-) A-I      intronic
chr16:2179034(-) A-I      intronic
chr16:2179038(-) A-I      intronic
chr16:2145291(-) A-I      intronic
chr16:2151575(-) A-I      intronic
chr16:2151106(-) A-I      intronic
chr16:2148228(-) A-I      intronic
chr16:2146799(-) A-I      intronic
chr16:2146711(-) A-I      intronic
chr16:2146686(-) A-I      intronic
chr16:2146632(-) A-I      intronic
chr16:2145357(-) A-I      intronic
chr16:2145159(-) A-I      intronic
chr16:2145019(-) A-I      intronic
chr16:2146700(-) A-I      intronic
chr16:2151227(-) A-I      intronic
chr16:2145243(-) A-I      intronic
chr16:2146655(-) A-I      intronic
chr16:2146791(-) A-I      intronic
chr16:2145307(-) A-I      intronic
chr16:2151536(-) A-I      intronic
chr16:2145154(-) A-I      intronic
chr16:2145217(-) A-I      intronic
chr16:2146760(-) A-I      intronic
chr16:2151560(-) A-I      intronic
chr16:2145221(-) A-I      intronic
chr16:2146636(-) A-I      intronic
chr16:2145167(-) A-I      intronic
chr16:2179218(-) A-I      intronic
chr16:2182327(-) A-I      intronic
chr16:2151557(-) A-I      intronic
chr16:2179675(-) A-I      intronic
chr16:2145303(-) A-I      intronic
chr16:2146623(-) A-I      intronic
chr16:2151016(-) A-I      intronic
chr16:2182493(-) A-I      intronic
chr16:2145293(-) A-I      intronic
chr16:2145185(-) A-I      intronic
chr16:2151392(-) A-I      intronic
chr16:2146645(-) A-I      intronic
chr16:2146685(-) A-I      intronic
chr16:2145166(-) A-I      intronic
chr16:2151141(-) A-I      intronic
chr16:2151257(-) A-I      intronic
chr16:2145229(-) A-I      intronic
chr16:2145332(-) A-I      intronic
chr16:2151009(-) A-I      intronic
chr16:2170056(-) A-I      intronic
chr16:2146684(-) A-I      intronic
chr16:2145275(-) A-I      intronic
chr16:2170620(-) A-I      intronic
chr16:2145246(-) A-I      intronic
chr16:2179112(-) A-I      intronic
chr16:2182089(-) A-I      intronic
chr16:2179402(-) A-I      intronic
chr16:2150997(-) A-I      intronic
chr16:2178989(-) A-I      intronic
chr16:2178834(-) A-I      intronic
chr16:2151562(-) A-I      intronic
chr16:2145041(-) A-I      intronic
chr16:2151232(-) A-I      intronic
chr16:2182970(-) A-I      intronic
chr16:2151125(-) A-I      intronic
chr16:2170581(-) A-I      intronic
chr16:2151605(-) A-I      intronic
chr16:2151580(-) A-I      intronic
chr16:2146745(-) A-I      intronic
chr16:2181702(-) A-I      intronic
chr16:2182514(-) A-I      intronic
chr16:2146797(-) A-I      intronic
chr16:2179035(-) A-I      intronic
chr16:2181741(-) A-I      intronic
chr16:2151228(-) A-I      intronic
chr16:2146589(-) A-I      intronic
chr16:2151151(-) A-I      intronic
chr16:2145299(-) A-I      intronic
chr16:2145165(-) A-I      intronic
chr16:2181495(-) A-I      intronic
chr16:2178844(-) A-I      intronic
chr16:2182960(-) A-I      intronic
chr16:2151017(-) A-I      intronic
chr16:2151550(-) A-I      intronic
chr16:2145266(-) A-I      intronic
chr16:2170087(-) A-I      intronic
chr16:2146649(-) A-I      intronic
chr16:2146790(-) A-I      intronic
chr16:2178976(-) A-I      intronic
chr16:2145370(-) A-I      intronic
chr16:2145328(-) A-I      intronic
chr16:2146665(-) A-I      intronic
chr16:2146722(-) A-I      intronic
chr16:2170177(-) A-I      intronic
chr16:2179057(-) A-I      intronic
chr16:2146681(-) A-I      intronic
chr16:2150989(-) A-I      intronic
chr16:2145298(-) A-I      intronic
chr16:2178773(-) A-I      intronic
chr16:2151252(-) A-I      intronic
chr16:2145176(-) A-I      intronic
chr16:2145891(-) A-I      intronic
chr16:2148970(-) A-I      intronic
chr16:2179029(-) A-I      intronic
chr16:2182007(-) A-I      intronic
chr16:2144080(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PKD1
chr16:2145891(-) A-I intron -    21960545
chr16:2159861(-) T-C exon CDS    21725310
chr16:2165444(-) G-T exon CDS    21725310
chr16:2151141(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PKD1
chr16:2138940-2138941(-) m6A 3'UTR       -
chr16:2138964-2138965(-) m6A 3'UTR       24284625
chr16:2138981-2138982(-) m6A 3'UTR       24284625
chr16:2139510-2139511(-) m6A 3'UTR       24284625//24981863//22575960
chr16:2139544-2139545(-) m6A 3'UTR//exon       24284625//24981863//22575960
chr16:2139686-2139687(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr16:2139752-2139753(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr16:2139771-2139772(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr16:2139794-2139795(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr16:2140023-2140024(-) m6A CDS//exon       24284625//27371828//27773536//22575960
chr16:2143471-2143472(-) m6A exon//intron       24284625
chr16:2144095-2144096(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:2144123-2144124(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:2144130-2144131(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:2144188-2144189(-) m6A 3'UTR//CDS       24981863//27371828//27773536
chr16:2144959-2144960(-) m6A intron       25456834//22608085
chr16:2144967-2144968(-) m6A intron       25456834//22608085
chr16:2145007-2145008(-) m6A intron       22608085
chr16:2147163-2147164(-) m6A 3'UTR//CDS       27371828//27773536
chr16:2147181-2147182(-) m6A 3'UTR//CDS       27371828//27773536
chr16:2147235-2147236(-) m6A 3'UTR//CDS       27773536
chr16:2149464-2149465(-) m6A exon//intron       -
chr16:2149488-2149489(-) m6A exon//intron       -
chr16:2153322-2153323(-) m6A CDS//exon//intron       24284625//27371828
chr16:2153415-2153416(-) m6A CDS//exon//intron       24284625//27371828
chr16:2153494-2153495(-) m6A CDS//exon//intron       24284625//27371828
chr16:2153568-2153569(-) m6A CDS//exon//intron       24284625//27371828
chr16:2153691-2153692(-) m6A CDS//exon//intron       24284625//27371828
chr16:2153892-2153893(-) m6A CDS//exon       24284625//27371828
chr16:2154518-2154519(-) m6A CDS//exon       24284625//27371828
chr16:2154555-2154556(-) m6A CDS//exon       24284625//27371828
chr16:2155393-2155394(-) m6A CDS//exon       -
chr16:2155404-2155405(-) m6A CDS//exon       -
chr16:2156629-2156630(-) m6A 3'UTR//CDS//exon       24284625
chr16:2158007-2158008(-) m6A CDS//exon//intron       24284625//25456834//27371828
chr16:2158349-2158350(-) m6A CDS//exon//intron       24284625//27371828//22575960
chr16:2158358-2158359(-) m6A CDS//exon//intron       24284625//27371828//22575960
chr16:2158454-2158455(-) m6A CDS//exon//intron       24284625//24209618//24981863//27371828//22575960
chr16:2158620-2158621(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2158811-2158812(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2158856-2158857(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2158883-2158884(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2159018-2159019(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2159195-2159196(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2159306-2159307(-) m6A CDS//exon//intron       24284625//24981863//27371828//27773536//22575960//22608085
chr16:2159333-2159334(-) m6A CDS//exon//intron       24284625//27773536//22575960//22608085
chr16:2159813-2159814(-) m6A CDS//intron       24284625//27371828
chr16:2159883-2159884(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22575960//22608085
chr16:2159984-2159985(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2160029-2160030(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2160155-2160156(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2160168-2160169(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2160302-2160303(-) m6A CDS//intron       24284625//24981863//27371828//22575960
chr16:2160857-2160858(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2160923-2160924(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr16:2161070-2161071(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161182-2161183(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161208-2161209(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161267-2161268(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161361-2161362(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161437-2161438(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161514-2161515(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161525-2161526(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr16:2161682-2161683(-) m6A CDS//exon//intron       24284625//22575960
chr16:2161829-2161830(-) m6A CDS//exon//intron       24284625
chr16:2162399-2162400(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2162469-2162470(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2162812-2162813(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2162899-2162900(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2162926-2162927(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2163244-2163245(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2163261-2163262(-) m6A 3'UTR//CDS//exon//intron       24284625
chr16:2163808-2163809(-) m6A exon//intron       24284625
chr16:2163822-2163823(-) m6A exon//intron       24284625
chr16:2164279-2164280(-) m6A 3'UTR//CDS//exon//intron       24284625//27371828
chr16:2164358-2164359(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//27371828
chr16:2164474-2164475(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863
chr16:2164656-2164657(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27371828
chr16:2164695-2164696(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27371828
chr16:2167531-2167532(-) m6A CDS//exon       27773536
chr16:2167648-2167649(-) m6A CDS//exon       27773536
chr16:2168075-2168076(-) m6A CDS//exon       24284625//27773536
chr16:2168146-2168147(-) m6A CDS       24284625//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PKD1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: PKD1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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