Detail Information

Basic Information:


  VIRBase ID:  

VHID00142942

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:           PHB:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H5-5p PHB
miRBase
Accession/Entrez ID		 MIMAT0015280 5245
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - HEL-215//HEL-S-54e//PHB1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PHB
chr17:47486993(-) A-I      intronic
chr17:47491068(-) A-I      intronic
chr17:47488660(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PHB
chr17:47481425-47481426(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr17:47481450-47481451(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr17:47481464-47481465(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr17:47481505-47481506(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr17:47481558-47481559(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr17:47481641-47481642(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481665-47481666(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481692-47481693(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481702-47481703(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481774-47481775(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481788-47481789(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:47481925-47481926(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:47482015-47482016(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:47482104-47482105(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr17:47482178-47482179(-) m6A 3'UTR       24284625//24981863//27773535
chr17:47482405-47482406(-) m6A CDS//intron       24284625//27773535//27371828//27773536//22575960
chr17:47482435-47482436(-) m6A CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr17:47484168-47484169(-) m6A CDS//exon//intron       27773535//27371828//27773536
chr17:47484215-47484216(-) m6A CDS//exon//intron       27773535//27371828//27773536
chr17:47489100-47489101(-) m6A CDS//exon//intron       22575960
chr17:47489129-47489130(-) m6A CDS//exon//intron       22575960
chr17:47489149-47489150(-) m6A CDS//exon//intron       22575960
chr17:47489264-47489265(-) m6A exon//intron       27773535//22575960
chr17:47489291-47489292(-) m6A exon//intron       27773535
chr17:47489304-47489305(-) m6A exon//intron       27773535
chr17:47489322-47489323(-) m6A exon//intron       27773535
chr17:47489339-47489340(-) m6A exon//intron       27773535
chr17:47489386-47489387(-) m6A exon//intron       27773535
chr17:47490522-47490523(-) m6A exon//intron       24284625//24209618//24981863//27773535
chr17:47490555-47490556(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960
chr17:47490627-47490628(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PHB
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H5-5p
Interactor2: PHB

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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