Basic Information:

  VIRBase ID:  

VHID00142678

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-5p:  MIMAT0015280          KCNC3:  NR_110912     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-5p	KCNC3
miRBase Accession/Entrez ID	MIMAT0015280	3748
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KSHIIID//KV3.3//SCA13

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCNC3	chr19:50819781(-) A-I      intronic chr19:50821677(-) A-I      intronic chr19:50819744(-) A-I      intronic chr19:50822234(-) A-I      intronic chr19:50819931(-) A-I      intronic chr19:50822089(-) A-I      intronic chr19:50821699(-) A-I      intronic chr19:50821553(-) A-I      intronic chr19:50821538(-) A-I      intronic chr19:50821300(-) A-I      intronic chr19:50821275(-) A-I      intronic chr19:50819780(-) A-I      intronic chr19:50819917(-) A-I      intronic chr19:50819806(-) A-I      intronic chr19:50821494(-) A-I      intronic chr19:50822189(-) A-I      intronic chr19:50821659(-) A-I      intronic chr19:50821263(-) A-I      intronic chr19:50821599(-) A-I      intronic chr19:50822212(-) A-I      intronic chr19:50821189(-) A-I      intronic chr19:50821705(-) A-I      intronic chr19:50821178(-) A-I      intronic chr19:50822083(-) A-I      intronic chr19:50821273(-) A-I      intronic chr19:50822082(-) A-I      intronic chr19:50819869(-) A-I      intronic chr19:50821645(-) A-I      intronic chr19:50821704(-) A-I      intronic chr19:50822129(-) A-I      intronic chr19:50822204(-) A-I      intronic chr19:50821317(-) A-I      intronic chr19:50822077(-) A-I      intronic chr19:50822113(-) A-I      intronic chr19:50821500(-) A-I      intronic chr19:50821444(-) A-I      intronic chr19:50821149(-) A-I      intronic chr19:50821499(-) A-I      intronic chr19:50821323(-) A-I      intronic chr19:50819990(-) A-I      intronic chr19:50821325(-) A-I      intronic chr19:50821504(-) A-I      intronic chr19:50821195(-) A-I      intronic chr19:50821492(-) A-I      intronic chr19:50824495(-) A-I      intronic chr19:50822116(-) A-I      intronic chr19:50821656(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KCNC3	chr19:50821494(-) A-I intron -    22327324 chr19:50821711(-) A-I intron -    22327324 chr19:50821494(-) A-G intron -    22484847 chr19:50821499(-) A-G intron -    22484847 chr19:50821500(-) A-G intron -    22484847 chr19:50821570(-) A-G intron -    22484847 chr19:50821711(-) A-G intron -    22484847 chr19:50822082(-) A-G intron -    22484847 chr19:50822083(-) A-G intron -    22484847 chr19:50822142(-) A-G intron -    22484847 chr19:50822205(-) A-G intron -    22484847 chr19:50822212(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCNC3	chr19:50815784-50815785(-) m6A 3'UTR       - chr19:50815874-50815875(-) m6A 3'UTR       - chr19:50816082-50816083(-) m6A 3'UTR       - chr19:50816103-50816104(-) m6A 3'UTR       - chr19:50816174-50816175(-) m6A 3'UTR       - chr19:50816181-50816182(-) m6A 3'UTR       - chr19:50816283-50816284(-) m6A 3'UTR       - chr19:50816352-50816353(-) m6A 3'UTR       - chr19:50816364-50816365(-) m6A 3'UTR       - chr19:50816380-50816381(-) m6A 3'UTR       - chr19:50816900-50816901(-) m6A 3'UTR       27773535 chr19:50816932-50816933(-) m6A 3'UTR       27773535 chr19:50816986-50816987(-) m6A 3'UTR       27773535 chr19:50817062-50817063(-) m6A 3'UTR       24209618//27773535 chr19:50817071-50817072(-) m6A 3'UTR       24209618//27773535 chr19:50817093-50817094(-) m6A 3'UTR       24209618//27773535 chr19:50817115-50817116(-) m6A 3'UTR       24209618//27773535 chr19:50817147-50817148(-) m6A 3'UTR       24209618//27773535 chr19:50817223-50817224(-) m6A 3'UTR       27773535 chr19:50817244-50817245(-) m6A 3'UTR       27773535 chr19:50817251-50817252(-) m6A 3'UTR       27773535 chr19:50817328-50817329(-) m6A 3'UTR       - chr19:50817334-50817335(-) m6A 3'UTR       - chr19:50817363-50817364(-) m6A 3'UTR       - chr19:50817529-50817530(-) m6A 3'UTR       - chr19:50817549-50817550(-) m6A 3'UTR       - chr19:50817556-50817557(-) m6A 3'UTR       - chr19:50817567-50817568(-) m6A 3'UTR       - chr19:50817598-50817599(-) m6A 3'UTR       - chr19:50817846-50817847(-) m6A 3'UTR       27773535 chr19:50817965-50817966(-) m6A 3'UTR       - chr19:50818830-50818831(-) m6A 3'UTR//intron       24981863 chr19:50819008-50819009(-) m6A 3'UTR//intron       - chr19:50819102-50819103(-) m6A 3'UTR//intron       - chr19:50819329-50819330(-) m6A 3'UTR       - chr19:50823494-50823495(-) m6A 3'UTR//intron       - chr19:50823575-50823576(-) m6A CDS//intron       - chr19:50823908-50823909(-) m6A CDS       - chr19:50823953-50823954(-) m6A CDS       24981863 chr19:50823992-50823993(-) m6A 5'UTR//CDS       24981863 chr19:50826530-50826531(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085 chr19:50826686-50826687(-) m6A CDS//intron       24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr19:50826743-50826744(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085 chr19:50826895-50826896(-) m6A CDS//intron       24209618//25456834//24981863 chr19:50827094-50827095(-) m6A CDS//intron       24209618//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCNC3	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-5p
Interactor2: KCNC3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg