Basic Information:

  VIRBase ID:  

VHID00141848

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          CCDC30:  NM_001355226     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	CCDC30
miRBase Accession/Entrez ID	MIMAT0015279	728621
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PFD6L//PFDN6L

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC30	chr1:43113686(+) A-I      intronic chr1:43120239(+) A-I      3'UTR chr1:43113642(+) A-I      intronic chr1:43113668(+) A-I      intronic chr1:43113675(+) A-I      intronic chr1:43113676(+) A-I      intronic chr1:43113637(+) A-I      intronic chr1:43017711(+) A-I      intronic chr1:43003902(+) A-I      intronic chr1:43003903(+) A-I      intronic chr1:43003934(+) A-I      intronic chr1:43003946(+) A-I      intronic chr1:43011898(+) A-I      intronic chr1:43017538(+) A-I      intronic chr1:43017672(+) A-I      intronic chr1:43017684(+) A-I      intronic chr1:43003793(+) A-I      intronic chr1:43030011(+) A-I      intronic chr1:43034415(+) A-I      intronic chr1:43034526(+) A-I      intronic chr1:43034539(+) A-I      intronic chr1:43038565(+) A-I      intronic chr1:43044707(+) A-I      intronic chr1:43105622(+) A-I      intronic chr1:43044741(+) A-I      intronic chr1:43044762(+) A-I      intronic chr1:43069696(+) A-I      intronic chr1:43069712(+) A-I      intronic chr1:43069800(+) A-I      intronic chr1:43079826(+) A-I      intronic chr1:43081069(+) A-I      intronic chr1:43081142(+) A-I      intronic chr1:43081179(+) A-I      intronic chr1:43098295(+) A-I      intronic chr1:43098311(+) A-I      intronic chr1:43099857(+) A-I      intronic chr1:43101997(+) A-I      intronic chr1:43102002(+) A-I      intronic chr1:43105612(+) A-I      intronic chr1:43105620(+) A-I      intronic chr1:43011368(+) A-I      intronic chr1:43003802(+) A-I      intronic chr1:43120110(+) A-I      3'UTR chr1:43120113(+) A-I      3'UTR chr1:43120172(+) A-I      3'UTR chr1:43120266(+) A-I      3'UTR chr1:43120245(+) A-I      3'UTR chr1:43120180(+) A-I      3'UTR chr1:43120181(+) A-I      3'UTR chr1:43120214(+) A-I      3'UTR chr1:43011494(+) A-I      intronic chr1:43115993(+) A-I      intronic chr1:43072050(+) A-I      intronic chr1:43098642(+) A-I      intronic chr1:43105587(+) A-I      intronic chr1:43116012(+) A-I      intronic chr1:43080256(+) A-I      intronic chr1:43009093(+) A-I      intronic chr1:43076298(+) A-I      intronic chr1:43011468(+) A-I      intronic chr1:43029288(+) A-I      intronic chr1:43052029(+) A-I      intronic chr1:43069781(+) A-I      intronic chr1:43120249(+) A-I      3'UTR chr1:43003763(+) A-I      intronic chr1:43080428(+) A-I      intronic chr1:43087322(+) A-I      intronic chr1:43074156(+) A-I      intronic chr1:43071208(+) A-I      intronic chr1:43003762(+) A-I      intronic chr1:43100991(+) A-I      intronic chr1:43082876(+) A-I      intronic chr1:43120256(+) A-I      3'UTR chr1:43030205(+) A-I      intronic chr1:43120318(+) A-I      3'UTR chr1:43120213(+) A-I      3'UTR chr1:43098620(+) A-I      intronic chr1:43069764(+) A-I      intronic chr1:43116018(+) A-I      intronic chr1:43098533(+) A-I      intronic chr1:43044755(+) A-I      intronic chr1:43008165(+) A-I      intronic chr1:43120320(+) A-I      3'UTR chr1:43069819(+) A-I      intronic chr1:43096318(+) A-I      intronic chr1:43052915(+) A-I      intronic chr1:43096327(+) A-I      intronic chr1:43065030(+) A-I      intronic chr1:43010286(+) A-I      intronic chr1:43096154(+) A-I      intronic chr1:43116562(+) A-I      intronic chr1:43038341(+) A-I      intronic chr1:43101411(+) A-I      intronic chr1:43019292(+) A-I      intronic chr1:43030133(+) A-I      intronic chr1:43120182(+) A-I      3'UTR chr1:43098271(+) A-I      intronic chr1:43112510(+) A-I      intronic chr1:43106672(+) A-I      intronic chr1:43010192(+) A-I      intronic chr1:43050020(+) A-I      intronic chr1:43019207(+) A-I      intronic chr1:43074406(+) A-I      intronic chr1:43047845(+) A-I      intronic chr1:43041157(+) A-I      intronic chr1:43098272(+) A-I      intronic chr1:43019276(+) A-I      intronic chr1:43030149(+) A-I      intronic chr1:43052903(+) A-I      intronic chr1:43080446(+) A-I      intronic chr1:43116534(+) A-I      intronic chr1:43008784(+) A-I      intronic chr1:43105494(+) A-I      intronic chr1:43064998(+) A-I      intronic chr1:43072075(+) A-I      intronic chr1:43011936(+) A-I      intronic chr1:43052031(+) A-I      intronic chr1:43052907(+) A-I      intronic chr1:43069830(+) A-I      intronic chr1:43096215(+) A-I      intronic chr1:43009123(+) A-I      intronic chr1:43120324(+) A-I      3'UTR chr1:43003394(+) A-I      intronic chr1:43063372(+) A-I      intronic chr1:43087553(+) A-I      intronic chr1:43098610(+) A-I      intronic chr1:43082877(+) A-I      intronic chr1:43076267(+) A-I      intronic chr1:43072863(+) A-I      intronic chr1:43120253(+) A-I      3'UTR chr1:43041242(+) A-I      intronic chr1:43076207(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC30	chr1:43019207(+) A-G intron -    22484847 chr1:43044755(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC30	chr1:42938811-42938812(+) m6A 5'UTR//exon//intron       27773535 chr1:43057794-43057795(+) m6A exon//intron       - chr1:43057801-43057802(+) m6A exon//intron       - chr1:43057808-43057809(+) m6A exon//intron       - chr1:43057831-43057832(+) m6A exon//intron       - chr1:43057841-43057842(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC30	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: CCDC30

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg