Basic Information:

  VIRBase ID:  

VHID00141821

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          FAM110C:  NM_001077710     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	FAM110C
miRBase Accession/Entrez ID	MIMAT0015279	642273
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM110C	chr2:39030-39031(-) m6A 3'UTR       24284625 chr2:39046-39047(-) m6A 3'UTR       24284625 chr2:39065-39066(-) m6A 3'UTR       24284625 chr2:39188-39189(-) m6A 3'UTR       24284625 chr2:39232-39233(-) m6A 3'UTR       24284625 chr2:39245-39246(-) m6A 3'UTR       24284625 chr2:39253-39254(-) m6A 3'UTR       24284625 chr2:41235-41236(-) m6A 3'UTR//exon       24284625//24981863 chr2:41344-41345(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr2:41374-41375(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr2:41407-41408(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr2:41440-41441(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960//22608085 chr2:41446-41447(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960//22608085 chr2:41490-41491(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr2:41562-41563(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22608085 chr2:41601-41602(-) m6A 3'UTR//exon       24284625//24209618//25456834//27371828 chr2:41619-41620(-) m6A CDS//exon       24284625//25456834//27371828 chr2:42813-42814(-) m6A exon//intron       24284625//25456834//27371828 chr2:42824-42825(-) m6A exon//intron       24284625//25456834//27371828 chr2:42930-42931(-) m6A exon//intron       24284625//27371828 chr2:45445-45446(-) m6A CDS//intron       24284625//27371828 chr2:45469-45470(-) m6A CDS//intron       24284625//27371828 chr2:45660-45661(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960 chr2:45678-45679(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960 chr2:45711-45712(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960 chr2:45777-45778(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:45886-45887(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:45903-45904(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:45942-45943(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536 chr2:45987-45988(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536 chr2:46012-46013(-) m1A CDS//intron       26863196 chr2:46092-46093(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:46097-46098(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:46225-46226(-) m6A CDS//intron       27371828//27773536 chr2:46311-46312(-) m6A CDS//intron       24284625//25456834//27371828//27773536 chr2:46329-46330(-) m6A CDS//intron       24284625//25456834//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM110C	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: FAM110C

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg