Detail Information

Basic Information:


  VIRBase ID:  

VHID00141818

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:           CYB5RL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H3-5p CYB5RL
miRBase
Accession/Entrez ID		 MIMAT0015279 606495
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CYB5RL
chr1:54648367(-) A-I      intronic
chr1:54648403(-) A-I      intronic
chr1:54642153(-) A-I      intronic
chr1:54653546(-) A-I      intronic
chr1:54648453(-) A-I      intronic
chr1:54648355(-) A-I      intronic
chr1:54648421(-) A-I      intronic
chr1:54648387(-) A-I      intronic
chr1:54654708(-) A-I      intronic
chr1:54658459(-) A-I      intronic
chr1:54659403(-) A-I      intronic
chr1:54641988(-) A-I      intronic
chr1:54648490(-) A-I      intronic
chr1:54649404(-) A-I      intronic
chr1:54649414(-) A-I      intronic
chr1:54649526(-) A-I      intronic
chr1:54653731(-) A-I      intronic
chr1:54648383(-) A-I      intronic
chr1:54648298(-) A-I      intronic
chr1:54642109(-) A-I      intronic
chr1:54647565(-) A-I      intronic
chr1:54646629(-) A-I      intronic
chr1:54647359(-) A-I      intronic
chr1:54638049(-) A-I      3'UTR
chr1:54648360(-) A-I      intronic
chr1:54642152(-) A-I      intronic
chr1:54647459(-) A-I      intronic
chr1:54647526(-) A-I      intronic
chr1:54648422(-) A-I      intronic
chr1:54662138(-) A-I      5'UTR
chr1:54646606(-) A-I      intronic
chr1:54646155(-) A-I      intronic
chr1:54649536(-) A-I      intronic
chr1:54642092(-) A-I      intronic
chr1:54646088(-) A-I      intronic
chr1:54648419(-) A-I      intronic
chr1:54646569(-) A-I      intronic
chr1:54648308(-) A-I      intronic
chr1:54647504(-) A-I      intronic
chr1:54646096(-) A-I      intronic
chr1:54647514(-) A-I      intronic
chr1:54647407(-) A-I      intronic
chr1:54647445(-) A-I      intronic
chr1:54646551(-) A-I      intronic
chr1:54648361(-) A-I      intronic
chr1:54642021(-) A-I      intronic
chr1:54642091(-) A-I      intronic
chr1:54642014(-) A-I      intronic
chr1:54649483(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CYB5RL
chr1:54642091(-) A-G intron -    22484847
chr1:54642092(-) A-G intron -    22484847
chr1:54646586(-) C-T intron -    22484847
chr1:54646629(-) A-G intron -    22484847
chr1:54647407(-) A-G intron -    22484847
chr1:54647445(-) A-G intron -    22484847
chr1:54647459(-) A-G intron -    22484847
chr1:54647504(-) A-G intron -    22484847
chr1:54647514(-) A-G intron -    22484847
chr1:54647526(-) A-G intron -    22484847
chr1:54647565(-) A-G intron -    22484847
chr1:54649483(-) A-G intron -    22484847
chr1:54649536(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CYB5RL
chr1:54638383-54638384(-) m6A 3'UTR//exon       27773535
chr1:54638394-54638395(-) m6A 3'UTR//exon       27773535
chr1:54638523-54638524(-) m6A 3'UTR//exon       27773535
chr1:54638562-54638563(-) m6A 3'UTR//exon       27773535
chr1:54639024-54639025(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr1:54639073-54639074(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr1:54639150-54639151(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639174-54639175(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639190-54639191(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639210-54639211(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639226-54639227(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639236-54639237(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:54639290-54639291(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr1:54639428-54639429(-) m6A 3'UTR//exon       24284625
chr1:54639450-54639451(-) m6A 3'UTR//exon       24284625//27773535
chr1:54639515-54639516(-) m6A 3'UTR//exon       24284625//27773535
chr1:54639690-54639691(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr1:54639852-54639853(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:54640022-54640023(-) m6A 3'UTR//exon       24284625//25456834//27773535//22608085
chr1:54640142-54640143(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:54640213-54640214(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:54640227-54640228(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:54640245-54640246(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:54640310-54640311(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:54640349-54640350(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:54640427-54640428(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085
chr1:54640452-54640453(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085
chr1:54641309-54641310(-) m6A CDS//intron       -
chr1:54644880-54644881(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863
chr1:54644904-54644905(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863
chr1:54644934-54644935(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863
chr1:54644951-54644952(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863
chr1:54651080-54651081(-) m6A exon//intron       27773535
chr1:54651153-54651154(-) m6A exon//intron       27773535
chr1:54662118-54662119(-) m6A 5'UTR//exon       24981863
chr1:54662157-54662158(-) m6A 5'UTR//exon       24284625//24981863
chr1:54665688-54665689(-) m6A 5'UTR       24981863
chr1:54665698-54665699(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CYB5RL
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H3-5p
Interactor2: CYB5RL

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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