Basic Information:

  VIRBase ID:  

VHID00141614

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          NBPF15:  NM_001385408     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	NBPF15
miRBase Accession/Entrez ID	MIMAT0015279	284565
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AB14//AG3//NBPF16

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NBPF15	chr1:148565726(+) A-I      intronic chr1:148565672(+) A-I      intronic chr1:148565640(+) A-I      intronic chr1:148565569(+) A-I      intronic chr1:148558174(+) A-I      ncRNA chr1:148595448(+) A-I      3'UTR chr1:148571520(+) A-I      intronic chr1:148595502(+) A-I      3'UTR chr1:148757498(+) A-I      3'UTR chr1:148558778(+) A-I      intronic chr1:148595438(+) A-I      3'UTR chr1:148595432(+) A-I      3'UTR chr1:148595454(+) A-I      3'UTR chr1:148571632(+) A-I      intronic chr1:148571594(+) A-I      intronic chr1:148595503(+) A-I      3'UTR chr1:148559612(+) A-I      intronic chr1:148757556(+) A-I      3'UTR chr1:148595429(+) A-I      3'UTR chr1:148565612(+) A-I      intronic chr1:148595439(+) A-I      3'UTR chr1:148595651(+) A-I      3'UTR chr1:148571658(+) A-I      intronic chr1:148565751(+) A-I      intronic chr1:148595482(+) A-I      3'UTR chr1:148595512(+) A-I      3'UTR chr1:148595511(+) A-I      3'UTR chr1:148595436(+) A-I      3'UTR chr1:148595664(+) A-I      3'UTR chr1:148595475(+) A-I      3'UTR chr1:148558327(+) A-I      intronic chr1:148595576(+) A-I      3'UTR chr1:148757620(+) A-I      3'UTR chr1:148595665(+) A-I      3'UTR chr1:148595506(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NBPF15	chr1:148595429(+) A-I exon 3'UTR    15342557 chr1:148595432(+) A-I exon 3'UTR    15342557 chr1:148595436(+) A-I exon 3'UTR    15342557 chr1:148595438(+) A-I exon 3'UTR    15342557 chr1:148595439(+) A-I exon 3'UTR    15342557 chr1:148595448(+) A-I exon 3'UTR    15342557 chr1:148595454(+) A-I exon 3'UTR    15342557   //15258596 chr1:148595475(+) A-I exon 3'UTR    15342557 chr1:148595482(+) A-I exon 3'UTR    15342557 chr1:148595502(+) A-I exon 3'UTR    15342557 chr1:148595503(+) A-I exon 3'UTR    15342557 chr1:148595506(+) A-I exon 3'UTR    15342557 chr1:148595511(+) A-I exon 3'UTR    15342557 chr1:148595512(+) A-I exon 3'UTR    15342557   //15258596 chr1:148595576(+) A-I exon 3'UTR    15342557   //15258596 chr1:148595651(+) A-I exon 3'UTR    15342557 chr1:148595664(+) A-I exon 3'UTR    15342557   //15258596 chr1:148595665(+) A-I exon 3'UTR    15342557   //15258596 chr1:148558778(+) A-G intron -    22484847 chr1:148571520(+) A-G intron -    22484847 chr1:148571658(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NBPF15	chr1:148556056-148556057(+) m6A 5'UTR//exon       24284625//24981863 chr1:148558278-148558279(+) m6A exon//intron       24209618 chr1:148561019-148561020(+) m6A 5'UTR//exon       24981863 chr1:148561043-148561044(+) m6A 5'UTR//exon       24981863 chr1:148594443-148594444(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:148594486-148594487(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:148594566-148594567(+) m6A CDS       24284625//22608085 chr1:148594779-148594780(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148594813-148594814(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148594820-148594821(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148594859-148594860(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148594882-148594883(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148594896-148594897(+) m6A 3'UTR       24284625//24981863//22608085 chr1:148595324-148595325(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NBPF15	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: NBPF15

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg