Basic Information:

  VIRBase ID:  

VHID00141568

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          C19orf38:  NM_001136482     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	C19orf38
miRBase Accession/Entrez ID	MIMAT0015279	255809
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HIDE1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C19orf38	chr19:10974538(+) A-I      intronic chr19:10974836(+) A-I      intronic chr19:10974839(+) A-I      intronic chr19:10974883(+) A-I      intronic chr19:10974501(+) A-I      intronic chr19:10977646(+) A-I      intronic chr19:10977655(+) A-I      intronic chr19:10974877(+) A-I      intronic chr19:10959886(+) A-I      intronic chr19:10974504(+) A-I      intronic chr19:10976201(+) A-I      intronic chr19:10976218(+) A-I      intronic chr19:10977255(+) A-I      intronic chr19:10977262(+) A-I      intronic chr19:10977663(+) A-I      intronic chr19:10969743(+) A-I      intronic chr19:10968539(+) A-I      intronic chr19:10977667(+) A-I      intronic chr19:10962078(+) A-I      intronic chr19:10974400(+) A-I      intronic chr19:10974413(+) A-I      intronic chr19:10974478(+) A-I      intronic chr19:10978095(+) A-I      intronic chr19:10974762(+) A-I      intronic chr19:10971396(+) A-I      intronic chr19:10974578(+) A-I      intronic chr19:10971043(+) A-I      intronic chr19:10976818(+) A-I      intronic chr19:10977649(+) A-I      intronic chr19:10968264(+) A-I      intronic chr19:10971090(+) A-I      intronic chr19:10969753(+) A-I      intronic chr19:10975962(+) A-I      intronic chr19:10974916(+) A-I      intronic chr19:10961795(+) A-I      intronic chr19:10974430(+) A-I      intronic chr19:10976731(+) A-I      intronic chr19:10962672(+) A-I      intronic chr19:10963632(+) A-I      intronic chr19:10976632(+) A-I      intronic chr19:10977656(+) A-I      intronic chr19:10974760(+) A-I      intronic chr19:10977265(+) A-I      intronic chr19:10974438(+) A-I      intronic chr19:10962151(+) A-I      intronic chr19:10976814(+) A-I      intronic chr19:10976606(+) A-I      intronic chr19:10977500(+) A-I      intronic chr19:10973028(+) A-I      intronic chr19:10978283(+) A-I      intronic chr19:10976590(+) A-I      intronic chr19:10974853(+) A-I      intronic chr19:10978012(+) A-I      intronic chr19:10974875(+) A-I      intronic chr19:10978023(+) A-I      intronic chr19:10976187(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C19orf38	chr19:10970753-10970754(+) m6A exon//intron       - chr19:10979912-10979913(+) m6A CDS       - chr19:10979968-10979969(+) m6A CDS       - chr19:10980007-10980008(+) m6A CDS       - chr19:10980051-10980052(+) m6A 3'UTR       25456834 chr19:10980059-10980060(+) m6A 3'UTR       25456834 chr19:10980146-10980147(+) m6A 3'UTR       24284625//25456834 chr19:10980165-10980166(+) m6A 3'UTR       24284625//25456834 chr19:10980208-10980209(+) m6A 3'UTR       - chr19:10980236-10980237(+) m6A 3'UTR       - chr19:10980275-10980276(+) m6A 3'UTR       - chr19:10980299-10980300(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C19orf38	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: C19orf38

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg