Basic Information:

  VIRBase ID:  

VHID00141386

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          MANEAL:  NM_152496     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	MANEAL
miRBase Accession/Entrez ID	MIMAT0015279	149175
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MANEAL	chr1:38263517(+) A-I      intronic chr1:38263243(+) A-I      intronic chr1:38263068(+) A-I      intronic chr1:38263538(+) A-I      intronic chr1:38263282(+) A-I      intronic chr1:38263556(+) A-I      intronic chr1:38263355(+) A-I      intronic chr1:38263380(+) A-I      intronic chr1:38263657(+) A-I      intronic chr1:38267271(+) A-I      3'UTR chr1:38264510(+) A-I      intronic chr1:38263498(+) A-I      intronic chr1:38263417(+) A-I      intronic chr1:38267110(+) A-I      3'UTR chr1:38262826(+) A-I      intronic chr1:38263456(+) A-I      intronic chr1:38263057(+) A-I      intronic chr1:38263464(+) A-I      intronic chr1:38263385(+) A-I      intronic chr1:38267100(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MANEAL	chr1:38259955-38259956(+) m6A CDS       22575960 chr1:38260164-38260165(+) m6A CDS       24209618 chr1:38260230-38260231(+) m6A CDS       24284625 chr1:38260254-38260255(+) m6A CDS       24284625 chr1:38260353-38260354(+) m6A CDS       24284625 chr1:38261492-38261493(+) m6A CDS       24284625 chr1:38265273-38265274(+) m6A 3'UTR//CDS//intron       24284625//22608085 chr1:38265516-38265517(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:38265534-38265535(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:38265591-38265592(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:38265612-38265613(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:38265761-38265762(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:38265783-38265784(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:38266110-38266111(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:38266141-38266142(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:38266171-38266172(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:38266327-38266328(+) m6A 3'UTR       24284625//24981863//22608085 chr1:38266339-38266340(+) m6A 3'UTR       24284625//24981863 chr1:38266354-38266355(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MANEAL	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: MANEAL

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg