Basic Information:

  VIRBase ID:  

VHID00141337

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          UBE2F:  NM_001278305     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	UBE2F
miRBase Accession/Entrez ID	MIMAT0015279	140739
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NCE2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UBE2F	chr2:238944954(+) A-I      intronic chr2:238944941(+) A-I      intronic chr2:238945300(+) A-I      intronic chr2:238938640(+) A-I      intronic chr2:238896928(+) A-I      intronic chr2:238878868(+) A-I      intronic chr2:238946327(+) A-I      intronic chr2:238947797(+) A-I      intronic chr2:238947782(+) A-I      intronic chr2:238946297(+) A-I      intronic chr2:238945396(+) A-I      intronic chr2:238945369(+) A-I      intronic chr2:238945352(+) A-I      intronic chr2:238945289(+) A-I      intronic chr2:238945275(+) A-I      intronic chr2:238945081(+) A-I      intronic chr2:238945059(+) A-I      intronic chr2:238944976(+) A-I      intronic chr2:238944972(+) A-I      intronic chr2:238944956(+) A-I      intronic chr2:238944837(+) A-I      intronic chr2:238943636(+) A-I      intronic chr2:238943633(+) A-I      intronic chr2:238943632(+) A-I      intronic chr2:238942903(+) A-I      intronic chr2:238941109(+) A-I      intronic chr2:238941106(+) A-I      intronic chr2:238946493(+) A-I      intronic chr2:238938666(+) A-I      intronic chr2:238946484(+) A-I      intronic chr2:238938637(+) A-I      intronic chr2:238935281(+) A-I      intronic chr2:238921832(+) A-I      intronic chr2:238921791(+) A-I      intronic chr2:238910475(+) A-I      intronic chr2:238905380(+) A-I      intronic chr2:238905379(+) A-I      intronic chr2:238941100(+) A-I      intronic chr2:238905364(+) A-I      intronic chr2:238902797(+) A-I      intronic chr2:238902270(+) A-I      intronic chr2:238898667(+) A-I      intronic chr2:238898617(+) A-I      intronic chr2:238898018(+) A-I      intronic chr2:238898014(+) A-I      intronic chr2:238896969(+) A-I      intronic chr2:238946392(+) A-I      intronic chr2:238946350(+) A-I      intronic chr2:238937974(+) A-I      intronic chr2:238899145(+) A-I      intronic chr2:238909949(+) A-I      intronic chr2:238898623(+) A-I      intronic chr2:238905332(+) A-I      intronic chr2:238938611(+) A-I      intronic chr2:238921827(+) A-I      intronic chr2:238898596(+) A-I      intronic chr2:238943699(+) A-I      intronic chr2:238898639(+) A-I      intronic chr2:238944944(+) A-I      intronic chr2:238946404(+) A-I      intronic chr2:238896937(+) A-I      intronic chr2:238946321(+) A-I      intronic chr2:238942788(+) A-I      intronic chr2:238901889(+) A-I      intronic chr2:238947756(+) A-I      intronic chr2:238945221(+) A-I      intronic chr2:238901890(+) A-I      intronic chr2:238905217(+) A-I      intronic chr2:238902153(+) A-I      intronic chr2:238946485(+) A-I      intronic chr2:238898124(+) A-I      intronic chr2:238945056(+) A-I      intronic chr2:238905749(+) A-I      intronic chr2:238898178(+) A-I      intronic chr2:238946364(+) A-I      intronic chr2:238921732(+) A-I      intronic chr2:238945360(+) A-I      intronic chr2:238945290(+) A-I      intronic chr2:238946447(+) A-I      intronic chr2:238941152(+) A-I      intronic chr2:238945320(+) A-I      intronic chr2:238884553(+) A-I      intronic chr2:238911548(+) A-I      intronic chr2:238947729(+) A-I      intronic chr2:238938759(+) A-I      intronic chr2:238902108(+) A-I      intronic chr2:238944845(+) A-I      intronic chr2:238945222(+) A-I      intronic chr2:238905608(+) A-I      intronic chr2:238899119(+) A-I      intronic chr2:238943743(+) A-I      intronic chr2:238879490(+) A-I      intronic chr2:238945336(+) A-I      intronic chr2:238942877(+) A-I      intronic chr2:238898503(+) A-I      intronic chr2:238898088(+) A-I      intronic chr2:238944840(+) A-I      intronic chr2:238938753(+) A-I      intronic chr2:238898672(+) A-I      intronic chr2:238910800(+) A-I      intronic chr2:238946470(+) A-I      intronic chr2:238938129(+) A-I      intronic chr2:238944948(+) A-I      intronic chr2:238945299(+) A-I      intronic chr2:238945251(+) A-I      intronic chr2:238920544(+) A-I      intronic chr2:238898575(+) A-I      intronic chr2:238878860(+) A-I      intronic chr2:238938844(+) A-I      intronic chr2:238945297(+) A-I      intronic chr2:238945004(+) A-I      intronic chr2:238945368(+) A-I      intronic chr2:238910227(+) A-I      intronic chr2:238899157(+) A-I      intronic chr2:238938849(+) A-I      intronic chr2:238911550(+) A-I      intronic chr2:238898147(+) A-I      intronic chr2:238880226(+) A-I      intronic chr2:238898075(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UBE2F	chr2:238875721-238875722(+) m6A 5'UTR       24981863 chr2:238925245-238925246(+) m6A 3'UTR//CDS//intron       27773535 chr2:238939208-238939209(+) m6A 3'UTR//CDS//exon//intron       27773535 chr2:238939245-238939246(+) m6A 3'UTR//CDS//exon//intron       27773535 chr2:238940881-238940882(+) m6A 3'UTR//CDS//exon//intron       27773535 chr2:238944562-238944563(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr2:238944576-238944577(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//22608085 chr2:238949932-238949933(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085 chr2:238950006-238950007(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr2:238950035-238950036(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr2:238950125-238950126(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085 chr2:238950238-238950239(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr2:238950286-238950287(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr2:238950326-238950327(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr2:238950407-238950408(+) m6A 3'UTR//exon       24284625//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	UBE2F	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: UBE2F

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg