Detail Information

Basic Information:


  VIRBase ID:  

VHID00141284

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:           MYOM3:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H3-5p MYOM3
miRBase
Accession/Entrez ID		 MIMAT0015279 127294
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MYOM3
chr1:24400206(-) A-I      intronic
chr1:24401490(-) A-I      intronic
chr1:24430998(-) A-I      intronic
chr1:24431033(-) A-I      intronic
chr1:24396224(-) A-I      intronic
chr1:24397047(-) A-I      intronic
chr1:24400185(-) A-I      intronic
chr1:24383041(-) A-I      3'UTR
chr1:24382983(-) A-I      3'UTR
chr1:24382996(-) A-I      3'UTR
chr1:24383038(-) A-I      3'UTR
chr1:24382980(-) A-I      3'UTR
chr1:24383036(-) A-I      3'UTR
chr1:24383032(-) A-I      3'UTR
chr1:24383023(-) A-I      3'UTR
chr1:24383037(-) A-I      3'UTR
chr1:24383131(-) A-I      3'UTR
chr1:24431104(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MYOM3
chr1:24382843-24382844(-) m6A 3'UTR//intron       24981863
chr1:24382954-24382955(-) m6A 3'UTR//intron       24981863
chr1:24383411-24383412(-) m6A 3'UTR//intron       24981863
chr1:24383471-24383472(-) m6A 3'UTR//intron       24981863
chr1:24383547-24383548(-) m6A 3'UTR//intron       24981863
chr1:24383614-24383615(-) m6A 3'UTR//intron       24981863
chr1:24383628-24383629(-) m6A 3'UTR//intron       24981863
chr1:24383635-24383636(-) m6A 3'UTR//intron       24981863
chr1:24383731-24383732(-) m6A 3'UTR//intron       24981863
chr1:24383741-24383742(-) m6A 3'UTR//intron       24981863
chr1:24383802-24383803(-) m6A 3'UTR//intron       24981863
chr1:24383812-24383813(-) m6A 3'UTR//intron       24981863
chr1:24388509-24388510(-) m6A CDS//intron       24981863
chr1:24388515-24388516(-) m6A CDS//intron       24981863
chr1:24388524-24388525(-) m6A CDS//intron       24981863
chr1:24388596-24388597(-) m6A CDS//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MYOM3
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H3-5p
Interactor2: MYOM3

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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