Detail Information

Basic Information:


  VIRBase ID:  

VHID00140824

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:           ZNF669:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H3-5p ZNF669
miRBase
Accession/Entrez ID		 MIMAT0015279 79862
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF669
chr1:247263716(-) A-I      NonSyn:Asn->Ser
chr1:247261595(-) A-I      3'UTR
chr1:247263694(-) A-I      Syn:Gln->Gln
chr1:247263047(-) A-I      intronic
chr1:247261661(-) A-I      intronic
chr1:247261816(-) A-I      intronic
chr1:247261828(-) A-I      intronic
chr1:247262702(-) A-I      intronic
chr1:247262730(-) A-I      intronic
chr1:247262737(-) A-I      intronic
chr1:247262747(-) A-I      intronic
chr1:247262750(-) A-I      intronic
chr1:247262756(-) A-I      intronic
chr1:247262838(-) A-I      intronic
chr1:247262846(-) A-I      intronic
chr1:247262975(-) A-I      intronic
chr1:247263067(-) A-I      intronic
chr1:247263140(-) A-I      intronic
chr1:247262773(-) A-I      intronic
chr1:247261636(-) A-I      intronic
chr1:247261705(-) A-I      intronic
chr1:247261722(-) A-I      intronic
chr1:247261754(-) A-I      intronic
chr1:247261768(-) A-I      intronic
chr1:247261772(-) A-I      intronic
chr1:247261797(-) A-I      intronic
chr1:247263467(-) A-I      3'UTR
chr1:247263466(-) A-I      3'UTR
chr1:247263347(-) A-I      3'UTR
chr1:247263461(-) A-I      3'UTR
chr1:247263376(-) A-I      3'UTR
chr1:247263402(-) A-I      3'UTR
chr1:247263359(-) A-I      3'UTR
chr1:247263435(-) A-I      3'UTR
chr1:247263671(-) A-I      3'UTR
chr1:247263661(-) A-I      3'UTR
chr1:247263481(-) A-I      3'UTR
chr1:247263369(-) A-I      3'UTR
chr1:247262728(-) A-I      intronic
chr1:247261840(-) A-I      intronic
chr1:247263076(-) A-I      intronic
chr1:247261767(-) A-I      intronic
chr1:247261730(-) A-I      intronic
chr1:247262973(-) A-I      intronic
chr1:247263451(-) A-I      3'UTR
chr1:247261670(-) A-I      intronic
chr1:247263132(-) A-I      intronic
chr1:247263717(-) A-I      NonSyn:Asn->Asp
chr1:247263695(-) A-I      NonSyn:Gln->Arg
chr1:247264181(-) A-I      NonSyn:Glu->Gly
chr1:247263719(-) A-I      NonSyn:Tyr->Cys
chr1:247263559(-) A-I      3'UTR
chr1:247262783(-) A-I      intronic
chr1:247261687(-) A-I      intronic
chr1:247263063(-) A-I      intronic
chr1:247263415(-) A-I      3'UTR
chr1:247263117(-) A-I      intronic
chr1:247261681(-) A-I      intronic
chr1:247262809(-) A-I      intronic
chr1:247263118(-) A-I      intronic
chr1:247263077(-) A-I      intronic
chr1:247261742(-) A-I      intronic
chr1:247263116(-) A-I      intronic
chr1:247261706(-) A-I      intronic
chr1:247263011(-) A-I      intronic
chr1:247263660(-) A-I      3'UTR
chr1:247262915(-) A-I      intronic
chr1:247261696(-) A-I      intronic
chr1:247262955(-) A-I      intronic
chr1:247261771(-) A-I      intronic
chr1:247261690(-) A-I      intronic
chr1:247261852(-) A-I      intronic
chr1:247261597(-) A-I      3'UTR
chr1:247263121(-) A-I      intronic
chr1:247263558(-) A-I      3'UTR
chr1:247261619(-) A-I      intronic
chr1:247263015(-) A-I      intronic
chr1:247263322(-) A-I      3'UTR
chr1:247262916(-) A-I      intronic
chr1:247262717(-) A-I      intronic
chr1:247261609(-) A-I      3'UTR
chr1:247261648(-) A-I      intronic
chr1:247261610(-) A-I      3'UTR
chr1:247262681(-) A-I      intronic
chr1:247262769(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF669
chr1:247263719(-) A-G exon CDS    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF669
chr1:247263368-247263369(-) m6A 3'UTR       27773535
chr1:247263382-247263383(-) m6A 3'UTR       27773535
chr1:247263480-247263481(-) m6A 3'UTR       24981863//27773535//22608085
chr1:247263503-247263504(-) m6A 3'UTR       24981863//27773535//22608085
chr1:247263611-247263612(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr1:247263633-247263634(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr1:247263643-247263644(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr1:247263822-247263823(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:247263891-247263892(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:247263906-247263907(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:247263975-247263976(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:247263990-247263991(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:247264074-247264075(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr1:247264091-247264092(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:247264130-247264131(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:247264158-247264159(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:247264175-247264176(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:247264227-247264228(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr1:247264242-247264243(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr1:247264259-247264260(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr1:247264269-247264270(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr1:247264353-247264354(-) m6A 3'UTR//CDS       24209618//24981863//27773535//22608085
chr1:247264395-247264396(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr1:247264425-247264426(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr1:247264509-247264510(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr1:247264528-247264529(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr1:247264602-247264603(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr1:247265049-247265050(-) m6A CDS//intron       24981863//27773535//22608085
chr1:247265077-247265078(-) m6A CDS//intron       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF669
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H3-5p
Interactor2: ZNF669

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...