Basic Information:

  VIRBase ID:  

VHID00140672

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          TMBIM1:  NM_022152     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	TMBIM1
miRBase Accession/Entrez ID	MIMAT0015279	64114
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LFG3//MST100//MSTP100//PP1201//RECS1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMBIM1	chr2:219138919-219138920(-) m6A 3'UTR       27773535 chr2:219139535-219139536(-) m6A 3'UTR//exon       - chr2:219139580-219139581(-) m6A 3'UTR//exon       - chr2:219142165-219142166(-) m6A 3'UTR//CDS//exon       27773535 chr2:219142585-219142586(-) m6A exon//intron       27773535 chr2:219142609-219142610(-) m6A exon//intron       27773535 chr2:219142679-219142680(-) m6A 3'UTR//5'UTR//CDS//exon       27773535 chr2:219146829-219146830(-) m6A CDS//exon//intron       24981863//27773535 chr2:219148767-219148768(-) m6A 5'UTR//intron       24981863//27371828 chr2:219151970-219151971(-) m6A 5'UTR//intron       24981863 chr2:219152011-219152012(-) m6A 5'UTR//intron       24981863 chr2:219154693-219154694(-) m6A 5'UTR//intron       24981863 chr2:219154788-219154789(-) m6A 5'UTR//intron       24981863 chr2:219157234-219157235(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMBIM1	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: TMBIM1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg