Basic Information:

  VIRBase ID:  

VHID00140630

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          SLAMF7:  NM_001282593     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	SLAMF7
miRBase Accession/Entrez ID	MIMAT0015279	57823
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	19A//CD319//CRACC//CS1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLAMF7	chr1:160717305(+) A-I      intronic chr1:160713714(+) A-I      intronic chr1:160717439(+) A-I      intronic chr1:160713713(+) A-I      intronic chr1:160713701(+) A-I      intronic chr1:160713664(+) A-I      intronic chr1:160713662(+) A-I      intronic chr1:160713631(+) A-I      intronic chr1:160713645(+) A-I      intronic chr1:160713625(+) A-I      intronic chr1:160717319(+) A-I      intronic chr1:160717363(+) A-I      intronic chr1:160717310(+) A-I      intronic chr1:160717410(+) A-I      intronic chr1:160713546(+) A-I      intronic chr1:160717215(+) A-I      intronic chr1:160717327(+) A-I      intronic chr1:160717267(+) A-I      intronic chr1:160713761(+) A-I      intronic chr1:160717236(+) A-I      intronic chr1:160713644(+) A-I      intronic chr1:160717343(+) A-I      intronic chr1:160717373(+) A-I      intronic chr1:160717323(+) A-I      intronic chr1:160713699(+) A-I      intronic chr1:160713688(+) A-I      intronic chr1:160713663(+) A-I      intronic chr1:160717254(+) A-I      intronic chr1:160713553(+) A-I      intronic chr1:160713753(+) A-I      intronic chr1:160713700(+) A-I      intronic chr1:160713641(+) A-I      intronic chr1:160713640(+) A-I      intronic chr1:160724217(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLAMF7	chr1:160713699(+) A-I intron -    22327324 chr1:160713753(+) A-I intron -    22327324 chr1:160717327(+) A-I intron -    22327324 chr1:160717343(+) A-I intron -    22327324 chr1:160709100(+) T-G exon CDS    21725310 chr1:160713546(+) A-G intron -    22484847 chr1:160713553(+) A-G intron -    22484847 chr1:160713640(+) A-G intron -    22484847 chr1:160713641(+) A-G intron -    22484847 chr1:160713663(+) A-G intron -    22484847 chr1:160713688(+) A-G intron -    22484847 chr1:160713699(+) A-G intron -    22484847 chr1:160713753(+) A-G intron -    22484847 chr1:160713761(+) A-G intron -    22484847 chr1:160717215(+) A-G intron -    22484847 chr1:160717254(+) A-G intron -    22484847 chr1:160717267(+) A-G intron -    22484847 chr1:160717327(+) A-G intron -    22484847 chr1:160717343(+) A-G intron -    22484847 chr1:160717373(+) A-G intron -    22484847 chr1:160724007(+) C-T intron -    22484847 chr1:160724173(+) T-C intron -    22484847 chr1:160724188(+) G-A intron -    22484847 chr1:160724217(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLAMF7	chr1:160709312-160709313(+) m6A exon//intron       24981863 chr1:160709343-160709344(+) m6A exon//intron       - chr1:160709521-160709522(+) m6A exon//intron       - chr1:160717999-160718000(+) m6A CDS//exon//intron       - chr1:160718087-160718088(+) m6A CDS//exon//intron       26404942 chr1:160718172-160718173(+) m6A CDS//intron       26404942 chr1:160722967-160722968(+) m6A 3'UTR//exon       26404942 chr1:160723006-160723007(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723027-160723028(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723059-160723060(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723398-160723399(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723404-160723405(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723412-160723413(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723471-160723472(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723514-160723515(+) m6A 3'UTR//exon       24981863//26404942 chr1:160723555-160723556(+) m6A 3'UTR//exon       24209618//24981863//26404942 chr1:160723624-160723625(+) m6A 3'UTR//exon       24209618//24981863//26404942 chr1:160723696-160723697(+) m6A 3'UTR//exon       24209618//24981863//26404942 chr1:160723721-160723722(+) m6A 3'UTR//exon       24209618//26404942 chr1:160723727-160723728(+) m6A 3'UTR//exon       24209618//26404942 chr1:160723797-160723798(+) m6A 3'UTR//exon       24209618//26404942 chr1:160723815-160723816(+) m6A 3'UTR//exon       24209618//24981863 chr1:160723853-160723854(+) m6A 3'UTR//exon       24209618//24981863 chr1:160723873-160723874(+) m6A 3'UTR//exon       24209618//24981863 chr1:160723908-160723909(+) m6A 3'UTR//exon       24209618 chr1:160724065-160724066(+) m6A 3'UTR//exon       24209618 chr1:160724162-160724163(+) m6A 3'UTR//exon       24209618 chr1:160724232-160724233(+) m6A 3'UTR//exon       24209618//26404942 chr1:160724244-160724245(+) m6A 3'UTR//exon       24209618//26404942 chr1:160724252-160724253(+) m6A 3'UTR//exon       24209618//26404942 chr1:160724256-160724257(+) m6A 3'UTR//exon       24981863 chr1:160724291-160724292(+) m6A 3'UTR//exon       24981863//26404942 chr1:160724339-160724340(+) m6A 3'UTR//exon       24981863//26404942 chr1:160724405-160724406(+) m6A 3'UTR//exon       24981863//26404942 chr1:160724437-160724438(+) m6A 3'UTR//exon       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLAMF7	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: SLAMF7

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg