Basic Information:

  VIRBase ID:  

VHID00140491

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          SLC50A1:  NM_001122839     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	SLC50A1
miRBase Accession/Entrez ID	MIMAT0015279	55974
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HsSWEET1//RAG1AP1//SCP//slv//SWEET1

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC50A1	chr1:155109216(+) C-A intron -    22484847 chr1:155109217(+) T-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC50A1	chr1:155107916-155107917(+) m6A 5'UTR//exon       - chr1:155107979-155107980(+) m6A 5'UTR//exon       - chr1:155108033-155108034(+) m6A 5'UTR//exon       - chr1:155108047-155108048(+) m6A 5'UTR//exon       - chr1:155108108-155108109(+) m6A 5'UTR//exon//intron       - chr1:155108135-155108136(+) m6A 5'UTR//exon//intron       24981863 chr1:155108145-155108146(+) m6A 5'UTR//exon//intron       24981863 chr1:155108162-155108163(+) m6A exon//intron       24981863 chr1:155108409-155108410(+) m6A 5'UTR//CDS//exon//intron       24284625//24981863 chr1:155108779-155108780(+) m6A CDS//exon//intron       24284625//22575960 chr1:155108812-155108813(+) m6A CDS//exon//intron       24284625//22575960 chr1:155110469-155110470(+) m6A CDS//exon       24284625 chr1:155110728-155110729(+) m6A CDS//exon       24284625//24981863 chr1:155110734-155110735(+) m6A CDS//exon       24284625//24981863 chr1:155110751-155110752(+) m6A CDS//exon       24284625//24981863//22575960 chr1:155110798-155110799(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr1:155110807-155110808(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr1:155110865-155110866(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr1:155110892-155110893(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC50A1	Chromatin K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: SLC50A1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg