Basic Information:

  VIRBase ID:  

VHID00140084

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          FBXO6:  NM_018438     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	FBXO6
miRBase Accession/Entrez ID	MIMAT0015279	26270
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FBG2//FBS2//FBX6//Fbx6b

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FBXO6	chr1:11732594(+) A-I      intronic chr1:11729346(+) A-I      intronic chr1:11732544(+) A-I      intronic chr1:11732582(+) A-I      intronic chr1:11729344(+) A-I      intronic chr1:11727089(+) A-I      intronic chr1:11727053(+) A-I      intronic chr1:11732528(+) A-I      intronic chr1:11726353(+) A-I      intronic chr1:11726334(+) A-I      intronic chr1:11729320(+) A-I      intronic chr1:11732547(+) A-I      intronic chr1:11729877(+) A-I      intronic chr1:11729267(+) A-I      intronic chr1:11729303(+) A-I      intronic chr1:11727093(+) A-I      intronic chr1:11729894(+) A-I      intronic chr1:11727018(+) A-I      intronic chr1:11727876(+) A-I      intronic chr1:11727054(+) A-I      intronic chr1:11729954(+) A-I      intronic chr1:11729874(+) A-I      intronic chr1:11727057(+) A-I      intronic chr1:11727894(+) A-I      intronic chr1:11728002(+) A-I      intronic chr1:11728554(+) A-I      intronic chr1:11728038(+) A-I      intronic chr1:11726337(+) A-I      intronic chr1:11726494(+) A-I      intronic chr1:11730788(+) A-I      intronic chr1:11730749(+) A-I      intronic chr1:11725692(+) A-I      intronic chr1:11728548(+) A-I      intronic chr1:11729833(+) A-I      intronic chr1:11730123(+) A-I      intronic chr1:11726949(+) A-I      intronic chr1:11729338(+) A-I      intronic chr1:11726699(+) A-I      intronic chr1:11726349(+) A-I      intronic chr1:11726650(+) A-I      intronic chr1:11730085(+) A-I      intronic chr1:11726282(+) A-I      intronic chr1:11727083(+) A-I      intronic chr1:11725888(+) A-I      intronic chr1:11728524(+) A-I      intronic chr1:11729345(+) A-I      intronic chr1:11730081(+) A-I      intronic chr1:11729968(+) A-I      intronic chr1:11727084(+) A-I      intronic chr1:11729956(+) A-I      intronic chr1:11730084(+) A-I      intronic chr1:11729268(+) A-I      intronic chr1:11728028(+) A-I      intronic chr1:11729835(+) A-I      intronic chr1:11728555(+) A-I      intronic chr1:11726931(+) A-I      intronic chr1:11729259(+) A-I      intronic chr1:11726580(+) A-I      intronic chr1:11725717(+) A-I      intronic chr1:11728541(+) A-I      intronic chr1:11729436(+) A-I      intronic chr1:11726568(+) A-I      intronic chr1:11726287(+) A-I      intronic chr1:11727159(+) A-I      intronic chr1:11726943(+) A-I      intronic chr1:11726341(+) A-I      intronic chr1:11726933(+) A-I      intronic chr1:11726713(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FBXO6	chr1:11726568(+) A-G intron -    22484847 chr1:11726580(+) A-G intron -    22484847 chr1:11726640(+) T-C intron -    22484847 chr1:11726650(+) A-G intron -    22484847 chr1:11726931(+) A-G intron -    22484847 chr1:11726933(+) A-G intron -    22484847 chr1:11727159(+) A-G intron -    22484847 chr1:11728028(+) A-G intron -    22484847 chr1:11729259(+) A-G intron -    22484847 chr1:11729268(+) A-G intron -    22484847 chr1:11729436(+) A-G intron -    22484847 chr1:11729539(+) A-T intron -    22484847 chr1:11729831(+) T-C intron -    22484847 chr1:11729833(+) A-G intron -    22484847 chr1:11730081(+) A-G intron -    22484847 chr1:11730085(+) A-G intron -    22484847 chr1:11730749(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FBXO6	chr1:11724259-11724260(+) m6A 5'UTR       24981863 chr1:11724270-11724271(+) m6A 5'UTR       24981863 chr1:11724608-11724609(+) m6A exon//intron       24981863 chr1:11724788-11724789(+) m6A exon//intron       24981863 chr1:11728746-11728747(+) m6A CDS//exon       24981863 chr1:11728770-11728771(+) m6A CDS//exon       24981863 chr1:11728821-11728822(+) m6A CDS//exon       - chr1:11728851-11728852(+) m6A CDS//exon       - chr1:11728914-11728915(+) m6A CDS//exon       - chr1:11728920-11728921(+) m6A CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FBXO6	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: FBXO6

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg