Basic Information:

  VIRBase ID:  

VHID00139525

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          TBX19:  NM_005149     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	TBX19
miRBase Accession/Entrez ID	MIMAT0015279	9095
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ747L4.1//TBS19//TPIT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TBX19	chr1:168277405(+) A-I      ncRNA chr1:168264474(+) A-I      intronic chr1:168264297(+) A-I      intronic chr1:168264418(+) A-I      intronic chr1:168266832(+) A-I      intronic chr1:168282917(+) A-I      3'UTR chr1:168258140(+) A-I      intronic chr1:168263672(+) A-I      intronic chr1:168282912(+) A-I      3'UTR chr1:168263701(+) A-I      intronic chr1:168282923(+) A-I      3'UTR chr1:168259281(+) A-I      intronic chr1:168258076(+) A-I      intronic chr1:168264392(+) A-I      intronic chr1:168263705(+) A-I      intronic chr1:168259337(+) A-I      intronic chr1:168263628(+) A-I      intronic chr1:168277403(+) A-I      ncRNA chr1:168264409(+) A-I      intronic chr1:168259289(+) A-I      intronic chr1:168263641(+) A-I      intronic chr1:168263671(+) A-I      intronic chr1:168267157(+) A-I      intronic chr1:168264267(+) A-I      intronic chr1:168268251(+) A-I      intronic chr1:168257725(+) A-I      intronic chr1:168268840(+) A-I      intronic chr1:168258138(+) A-I      intronic chr1:168267180(+) A-I      intronic chr1:168275847(+) A-I      intronic chr1:168268843(+) A-I      intronic chr1:168268751(+) A-I      intronic chr1:168283131(+) A-I      3'UTR chr1:168268754(+) A-I      intronic chr1:168264276(+) A-I      intronic chr1:168253805(+) A-I      intronic chr1:168261942(+) A-I      intronic chr1:168261940(+) A-I      intronic chr1:168268347(+) A-I      intronic chr1:168282922(+) A-I      3'UTR chr1:168263820(+) A-I      intronic chr1:168267179(+) A-I      intronic chr1:168268853(+) A-I      intronic chr1:168264382(+) A-I      intronic chr1:168263923(+) A-I      intronic chr1:168261955(+) A-I      intronic chr1:168259282(+) A-I      intronic chr1:168268226(+) A-I      intronic chr1:168268926(+) A-I      intronic chr1:168264408(+) A-I      intronic chr1:168268213(+) A-I      intronic chr1:168264414(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TBX19	chr1:168263923(+) A-G intron -    22484847 chr1:168264382(+) A-G intron -    22484847 chr1:168264408(+) A-G intron -    22484847 chr1:168264414(+) A-G intron -    22484847 chr1:168277403(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TBX19	chr1:168278025-168278026(+) m6A CDS//exon       - chr1:168278038-168278039(+) m6A CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TBX19	Cytosol K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: TBX19

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg