Basic Information:

  VIRBase ID:  

VHID00139516

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          TAF1A:  NM_005681     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	TAF1A
miRBase Accession/Entrez ID	MIMAT0015279	9015
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MGC:17061//RAFI48//SL1//TAFI48

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TAF1A	chr1:222745917(-) A-I      intronic chr1:222745912(-) A-I      intronic chr1:222745903(-) A-I      intronic chr1:222745880(-) A-I      intronic chr1:222745879(-) A-I      intronic chr1:222745870(-) A-I      intronic chr1:222745838(-) A-I      intronic chr1:222745514(-) A-I      intronic chr1:222745437(-) A-I      intronic chr1:222745553(-) A-I      intronic chr1:222745944(-) A-I      intronic chr1:222745528(-) A-I      intronic chr1:222745851(-) A-I      intronic chr1:222745439(-) A-I      intronic chr1:222748803(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TAF1A	chr1:222745851(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TAF1A	chr1:222731531-222731532(-) m6A 3'UTR       27773535 chr1:222731676-222731677(-) m6A 3'UTR//intron       27773535 chr1:222731747-222731748(-) m6A 3'UTR//intron       27773535 chr1:222742338-222742339(-) m6A exon//intron       24981863 chr1:222742478-222742479(-) m6A exon//intron       24981863 chr1:222757519-222757520(-) Y CDS//exon//intron       26075521 chr1:222761847-222761848(-) m6A 5'UTR//CDS//exon       24981863 chr1:222761855-222761856(-) m1A 5'UTR//CDS//exon       26863196 chr1:222763107-222763108(-) m6A 5'UTR//exon       24981863 chr1:222763188-222763189(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TAF1A	Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: TAF1A

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg