Basic Information:

  VIRBase ID:  

VHID00138973

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:  MIMAT0015279          LAD1:  NM_005558     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H3-5p	LAD1
miRBase Accession/Entrez ID	MIMAT0015279	3898
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LadA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LAD1	chr1:201359579(-) A-I      intronic chr1:201359618(-) A-I      intronic chr1:201359429(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LAD1	chr1:201350104-201350105(-) m6A 3'UTR//intron       27773535 chr1:201350176-201350177(-) m6A 3'UTR//intron       27773535 chr1:201350359-201350360(-) m6A 3'UTR//intron       27773535 chr1:201350385-201350386(-) m6A 3'UTR//intron       27773535 chr1:201350577-201350578(-) m6A 3'UTR//intron       25456834//27773535 chr1:201350653-201350654(-) m6A 3'UTR//intron       25456834//24981863//27773535//27371828 chr1:201350706-201350707(-) m6A 3'UTR//intron       25456834//24981863//27773535 chr1:201350774-201350775(-) m6A 3'UTR//intron       25456834//24981863//27773535 chr1:201350811-201350812(-) m6A 3'UTR//intron       25456834//24981863//27773535 chr1:201350852-201350853(-) m6A 3'UTR//intron       25456834//27773535 chr1:201350972-201350973(-) m6A 3'UTR//intron       27773535 chr1:201351000-201351001(-) m6A 3'UTR//intron       27773535 chr1:201351409-201351410(-) m6A CDS       27773535 chr1:201351420-201351421(-) m6A CDS//exon       27773535 chr1:201351787-201351788(-) m6A CDS//exon       27773535 chr1:201352496-201352497(-) m6A CDS//exon       27773535 chr1:201353935-201353936(-) m6A CDS       27773535 chr1:201353943-201353944(-) m6A CDS       27773535 chr1:201353957-201353958(-) m6A CDS       27773535 chr1:201354842-201354843(-) m6A CDS       27773535 chr1:201354878-201354879(-) m6A CDS       27773535 chr1:201355505-201355506(-) m6A CDS       27773535 chr1:201355538-201355539(-) m6A CDS       27773535 chr1:201355782-201355783(-) m6A CDS       25456834 chr1:201355814-201355815(-) m6A CDS       25456834 chr1:201355854-201355855(-) m6A CDS       25456834 chr1:201355890-201355891(-) m6A CDS       25456834 chr1:201356041-201356042(-) m6A CDS       25456834//24981863//27773535//27371828 chr1:201356053-201356054(-) m6A CDS       25456834//24981863//27773535//27371828 chr1:201356077-201356078(-) m6A CDS       25456834//24981863//27773535//27371828 chr1:201356098-201356099(-) m6A CDS       25456834//24981863//27773535//27371828 chr1:201356129-201356130(-) m6A CDS       25456834//24981863//27773535//27371828 chr1:201356217-201356218(-) m6A CDS       25456834//27773535//27371828 chr1:201356237-201356238(-) m6A CDS       25456834//27773535//27371828 chr1:201358311-201358312(-) m6A CDS       27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LAD1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H3-5p
Interactor2: LAD1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg